PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64901-64950 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 64.2360 | 57.8454 | 72.2140 | 63.0306 | 10562 | 7697 | 13647 | 5251 | 3074 | 58.5412 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 75.6187 | 75.7143 | 75.5233 | 66.0841 | 477 | 153 | 469 | 152 | 89 | 58.5526 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 88.0374 | 100.0000 | 78.6311 | 86.1918 | 469 | 0 | 471 | 128 | 75 | 58.5938 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.4540 | 96.3472 | 98.5866 | 68.3439 | 15008 | 569 | 14997 | 215 | 126 | 58.6047 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e0 | het | 74.8173 | 62.7655 | 92.5973 | 79.8974 | 1448 | 859 | 1451 | 116 | 68 | 58.6207 | |
| ciseli-custom | INDEL | * | map_l150_m2_e1 | het | 67.0194 | 62.9870 | 71.6034 | 93.6172 | 582 | 342 | 585 | 232 | 136 | 58.6207 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6915 | 99.4869 | 99.8970 | 58.9754 | 28115 | 145 | 28118 | 29 | 17 | 58.6207 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.4514 | 96.5009 | 98.4209 | 44.2767 | 6481 | 235 | 7230 | 116 | 68 | 58.6207 | |
| ciseli-custom | INDEL | * | HG002complexvar | * | 81.0665 | 80.3871 | 81.7575 | 57.5412 | 61845 | 15089 | 61574 | 13739 | 8055 | 58.6287 | |
| gduggal-snapplat | INDEL | D6_15 | * | homalt | 55.1666 | 41.1476 | 83.6743 | 63.6351 | 2603 | 3723 | 2168 | 423 | 248 | 58.6288 | |
| ciseli-custom | INDEL | * | map_l150_m1_e0 | het | 66.7585 | 62.9240 | 71.0907 | 93.2928 | 538 | 317 | 541 | 220 | 129 | 58.6364 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | het | 99.3853 | 99.2028 | 99.5685 | 52.2881 | 18044 | 145 | 17305 | 75 | 44 | 58.6667 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6297 | 99.6336 | 99.6257 | 58.2037 | 20125 | 74 | 19963 | 75 | 44 | 58.6667 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 83.9473 | 78.4628 | 90.2562 | 82.3482 | 1858 | 510 | 1973 | 213 | 125 | 58.6854 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 78.8022 | 96.7658 | 66.4639 | 76.6264 | 748 | 25 | 874 | 441 | 259 | 58.7302 | |
| gduggal-snapvard | INDEL | D16_PLUS | * | * | 10.7850 | 6.2058 | 41.1492 | 71.3717 | 421 | 6363 | 444 | 635 | 373 | 58.7402 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.8906 | 94.5652 | 97.2537 | 40.0019 | 6351 | 365 | 6268 | 177 | 104 | 58.7571 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | homalt | 99.1510 | 99.0259 | 99.2764 | 48.8027 | 13317 | 131 | 13308 | 97 | 57 | 58.7629 | |
| jmaeng-gatk | INDEL | * | * | * | 99.1098 | 99.0216 | 99.1981 | 60.9184 | 341171 | 3371 | 341038 | 2757 | 1621 | 58.7958 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4087 | 100.0000 | 98.8243 | 35.3599 | 1427 | 0 | 1429 | 17 | 10 | 58.8235 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | het | 93.4783 | 92.3313 | 94.6541 | 88.2916 | 301 | 25 | 301 | 17 | 10 | 58.8235 | |
| jpowers-varprowl | INDEL | * | map_l250_m2_e0 | het | 91.1271 | 90.4762 | 91.7874 | 97.0352 | 190 | 20 | 190 | 17 | 10 | 58.8235 | |
| jpowers-varprowl | INDEL | * | map_l250_m2_e1 | het | 91.1695 | 90.5213 | 91.8269 | 97.1006 | 191 | 20 | 191 | 17 | 10 | 58.8235 | |
| ciseli-custom | INDEL | * | tech_badpromoters | het | 56.4103 | 56.4103 | 56.4103 | 50.6329 | 22 | 17 | 22 | 17 | 10 | 58.8235 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7236 | 99.5599 | 99.8877 | 53.8466 | 14705 | 65 | 15125 | 17 | 10 | 58.8235 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4207 | 96.0961 | 98.7822 | 82.8691 | 640 | 26 | 1379 | 17 | 10 | 58.8235 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4207 | 96.0961 | 98.7822 | 82.8691 | 640 | 26 | 1379 | 17 | 10 | 58.8235 | |
| anovak-vg | INDEL | I1_5 | map_l250_m0_e0 | * | 54.6638 | 58.3333 | 51.4286 | 98.2952 | 14 | 10 | 18 | 17 | 10 | 58.8235 | |
| cchapple-custom | INDEL | * | segdup | * | 99.1318 | 98.9045 | 99.3602 | 94.4519 | 2528 | 28 | 2640 | 17 | 10 | 58.8235 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | het | 97.4411 | 97.3251 | 97.5575 | 83.6658 | 473 | 13 | 679 | 17 | 10 | 58.8235 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | het | 97.4137 | 97.1831 | 97.6454 | 84.4497 | 483 | 14 | 705 | 17 | 10 | 58.8235 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.2945 | 99.0956 | 99.4942 | 40.3814 | 6684 | 61 | 6688 | 34 | 20 | 58.8235 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e0 | homalt | 99.5956 | 99.3169 | 99.8758 | 64.6135 | 27335 | 188 | 27335 | 34 | 20 | 58.8235 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e1 | homalt | 99.5977 | 99.3200 | 99.8770 | 64.6290 | 27607 | 189 | 27607 | 34 | 20 | 58.8235 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | homalt | 94.6777 | 94.8220 | 94.5338 | 66.1957 | 293 | 16 | 294 | 17 | 10 | 58.8235 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 78.8266 | 91.1111 | 69.4611 | 67.7606 | 41 | 4 | 116 | 51 | 30 | 58.8235 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.2082 | 72.8625 | 82.1053 | 86.6197 | 196 | 73 | 78 | 17 | 10 | 58.8235 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 61.1765 | 61.9048 | 60.4651 | 96.8101 | 26 | 16 | 26 | 17 | 10 | 58.8235 | |
| ndellapenna-hhga | SNP | tv | map_l250_m1_e0 | * | 97.8332 | 96.3733 | 99.3380 | 86.1787 | 2551 | 96 | 2551 | 17 | 10 | 58.8235 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4108 | 95.7889 | 99.0885 | 72.8253 | 1888 | 83 | 1848 | 17 | 10 | 58.8235 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4108 | 95.7889 | 99.0885 | 72.8253 | 1888 | 83 | 1848 | 17 | 10 | 58.8235 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | * | 99.1468 | 99.0175 | 99.2763 | 70.8786 | 16327 | 162 | 16325 | 119 | 70 | 58.8235 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | * | 99.1554 | 99.0274 | 99.2837 | 70.9387 | 16495 | 162 | 16493 | 119 | 70 | 58.8235 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 70.1173 | 56.6230 | 92.0561 | 70.3396 | 389 | 298 | 394 | 34 | 20 | 58.8235 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 66.5163 | 53.3333 | 88.3562 | 71.0030 | 256 | 224 | 258 | 34 | 20 | 58.8235 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.3799 | 94.7426 | 98.0747 | 85.1647 | 865 | 48 | 866 | 17 | 10 | 58.8235 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 89.7762 | 88.0383 | 91.5842 | 74.4949 | 184 | 25 | 185 | 17 | 10 | 58.8235 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002complexvar | * | 92.4901 | 89.3812 | 95.8231 | 64.9842 | 1170 | 139 | 1170 | 51 | 30 | 58.8235 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.1862 | 98.0000 | 98.3732 | 57.8969 | 1029 | 21 | 1028 | 17 | 10 | 58.8235 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4518 | 99.2381 | 99.6663 | 75.2850 | 5080 | 39 | 5078 | 17 | 10 | 58.8235 | |