PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64651-64700 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | * | map_l150_m1_e0 | homalt | 98.3749 | 98.2684 | 98.4816 | 88.2067 | 454 | 8 | 454 | 7 | 4 | 57.1429 | |
| egarrison-hhga | INDEL | * | map_l150_m2_e0 | homalt | 98.4391 | 98.3368 | 98.5417 | 89.3000 | 473 | 8 | 473 | 7 | 4 | 57.1429 | |
| egarrison-hhga | INDEL | * | map_l150_m2_e1 | homalt | 98.4741 | 98.3740 | 98.5743 | 89.3400 | 484 | 8 | 484 | 7 | 4 | 57.1429 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 92.6470 | 89.9396 | 95.5224 | 75.4579 | 447 | 50 | 448 | 21 | 12 | 57.1429 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.1413 | 97.5124 | 98.7784 | 72.7143 | 588 | 15 | 566 | 7 | 4 | 57.1429 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.5662 | 98.6750 | 98.4576 | 87.8962 | 2681 | 36 | 2681 | 42 | 24 | 57.1429 | |
| jlack-gatk | SNP | * | map_l250_m0_e0 | homalt | 97.4194 | 96.0254 | 98.8543 | 92.0297 | 604 | 25 | 604 | 7 | 4 | 57.1429 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.0727 | 94.8590 | 99.3921 | 62.0781 | 2288 | 124 | 2289 | 14 | 8 | 57.1429 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5045 | 95.2373 | 99.8823 | 66.3421 | 5939 | 297 | 5939 | 7 | 4 | 57.1429 | |
| hfeng-pmm3 | INDEL | D16_PLUS | * | homalt | 99.3781 | 99.1726 | 99.5846 | 66.6072 | 1678 | 14 | 1678 | 7 | 4 | 57.1429 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.1570 | 98.8791 | 99.4364 | 71.0422 | 1235 | 14 | 1235 | 7 | 4 | 57.1429 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.2177 | 99.0809 | 99.3548 | 63.5417 | 1078 | 10 | 1078 | 7 | 4 | 57.1429 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.1570 | 98.8791 | 99.4364 | 71.0422 | 1235 | 14 | 1235 | 7 | 4 | 57.1429 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.0795 | 96.5665 | 99.6406 | 67.0543 | 15525 | 552 | 15525 | 56 | 32 | 57.1429 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.0795 | 96.5665 | 99.6406 | 67.0543 | 15525 | 552 | 15525 | 56 | 32 | 57.1429 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.1238 | 96.5350 | 99.7657 | 66.1570 | 2981 | 107 | 2981 | 7 | 4 | 57.1429 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4904 | 92.7660 | 98.3796 | 71.9905 | 1308 | 102 | 1275 | 21 | 12 | 57.1429 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9744 | 98.1557 | 99.8069 | 48.5309 | 3619 | 68 | 3619 | 7 | 4 | 57.1429 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.8663 | 91.3194 | 94.4664 | 79.0041 | 263 | 25 | 239 | 14 | 8 | 57.1429 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9000 | 98.3483 | 99.4578 | 70.4170 | 1310 | 22 | 1284 | 7 | 4 | 57.1429 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2017 | 98.7689 | 99.6382 | 66.9061 | 3851 | 48 | 3856 | 14 | 8 | 57.1429 | |
| hfeng-pmm1 | INDEL | I1_5 | map_siren | homalt | 99.6300 | 99.8350 | 99.4258 | 77.3924 | 1210 | 2 | 1212 | 7 | 4 | 57.1429 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1748 | 95.9660 | 98.4145 | 72.9224 | 904 | 38 | 869 | 14 | 8 | 57.1429 | |
| jli-custom | INDEL | * | map_l125_m2_e0 | homalt | 99.2147 | 99.3447 | 99.0850 | 85.6014 | 758 | 5 | 758 | 7 | 4 | 57.1429 | |
| jli-custom | INDEL | * | map_l125_m2_e1 | homalt | 99.2258 | 99.3540 | 99.0979 | 85.7143 | 769 | 5 | 769 | 7 | 4 | 57.1429 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.5465 | 99.6219 | 99.4711 | 83.1776 | 2635 | 10 | 2633 | 14 | 8 | 57.1429 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7217 | 99.5441 | 99.8999 | 60.0411 | 6987 | 32 | 6987 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5204 | 99.2464 | 99.7960 | 35.7063 | 3424 | 26 | 3425 | 7 | 4 | 57.1429 | |
| qzeng-custom | INDEL | D1_5 | map_siren | het | 92.9621 | 88.8889 | 97.4265 | 85.9785 | 2024 | 253 | 2120 | 56 | 32 | 57.1429 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.2635 | 98.1273 | 98.4000 | 38.2934 | 262 | 5 | 861 | 14 | 8 | 57.1429 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 73.9830 | 60.2273 | 95.8824 | 96.2121 | 106 | 70 | 163 | 7 | 4 | 57.1429 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.2759 | 99.4208 | 99.1315 | 77.0261 | 2403 | 14 | 2397 | 21 | 12 | 57.1429 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.9473 | 95.6422 | 98.2885 | 83.2788 | 417 | 19 | 402 | 7 | 4 | 57.1429 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.8420 | 95.3291 | 98.4036 | 71.9360 | 898 | 44 | 863 | 14 | 8 | 57.1429 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.8925 | 88.9660 | 99.3966 | 87.1383 | 1153 | 143 | 1153 | 7 | 4 | 57.1429 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 47.6190 | 55.5556 | 41.6667 | 96.1905 | 5 | 4 | 5 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 65.9704 | 49.6410 | 98.3092 | 51.1216 | 484 | 491 | 407 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | D1_5 | * | homalt | 99.1101 | 99.1497 | 99.0705 | 58.8372 | 48510 | 416 | 48497 | 455 | 260 | 57.1429 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.8753 | 98.4496 | 97.3077 | 64.2857 | 254 | 4 | 253 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.4803 | 98.6631 | 96.3255 | 58.8553 | 369 | 5 | 367 | 14 | 8 | 57.1429 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1511 | 98.7248 | 99.5812 | 37.8775 | 6658 | 86 | 6657 | 28 | 16 | 57.1429 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 85.7909 | 77.6699 | 95.8084 | 83.6435 | 160 | 46 | 160 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1222 | 94.0230 | 98.3173 | 61.3742 | 409 | 26 | 409 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | het | 63.4051 | 47.0954 | 96.9957 | 81.1030 | 227 | 255 | 226 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | het | 64.6730 | 48.4436 | 97.2549 | 83.3442 | 249 | 265 | 248 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | het | 64.8764 | 48.6590 | 97.3077 | 83.3972 | 254 | 268 | 253 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | het | 62.9857 | 53.8462 | 75.8621 | 84.2391 | 21 | 18 | 22 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | het | 64.3246 | 54.3478 | 78.7879 | 85.0679 | 25 | 21 | 26 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | het | 65.2113 | 55.3191 | 79.4118 | 85.2174 | 26 | 21 | 27 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e1 | het | 71.9569 | 57.6543 | 95.6967 | 78.7456 | 467 | 343 | 467 | 21 | 12 | 57.1429 | |