PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64201-64250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.3085 | 95.2111 | 99.5005 | 59.4918 | 13917 | 700 | 13943 | 70 | 38 | 54.2857 | |
| gduggal-snapplat | SNP | ti | map_l125_m1_e0 | het | 93.9862 | 93.7479 | 94.2256 | 83.3757 | 17124 | 1142 | 17150 | 1051 | 571 | 54.3292 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | * | 92.3781 | 89.7690 | 95.1434 | 82.0623 | 9950 | 1134 | 9952 | 508 | 276 | 54.3307 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2357 | 99.3126 | 99.1588 | 62.5047 | 10836 | 75 | 10845 | 92 | 50 | 54.3478 | |
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.9832 | 96.0537 | 95.9128 | 70.7498 | 4576 | 188 | 4576 | 195 | 106 | 54.3590 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 80.4826 | 84.6154 | 76.7347 | 91.5952 | 187 | 34 | 188 | 57 | 31 | 54.3860 | |
| gduggal-snapplat | INDEL | D1_5 | * | homalt | 88.9829 | 85.3881 | 92.8936 | 64.0746 | 41777 | 7149 | 49006 | 3749 | 2039 | 54.3878 | |
| ciseli-custom | SNP | ti | segdup | homalt | 98.5690 | 99.5470 | 97.6100 | 88.0096 | 7471 | 34 | 7433 | 182 | 99 | 54.3956 | |
| gduggal-snapvard | SNP | tv | * | homalt | 99.4119 | 98.9054 | 99.9237 | 19.2463 | 372995 | 4128 | 370593 | 283 | 154 | 54.4170 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.5191 | 99.4821 | 99.5562 | 75.3624 | 48021 | 250 | 47785 | 213 | 116 | 54.4601 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | homalt | 98.4233 | 98.2962 | 98.5507 | 86.5115 | 750 | 13 | 748 | 11 | 6 | 54.5455 | |
| ckim-dragen | INDEL | * | map_l125_m2_e1 | homalt | 98.4458 | 98.3204 | 98.5714 | 86.6180 | 761 | 13 | 759 | 11 | 6 | 54.5455 | |
| ckim-gatk | INDEL | * | map_l100_m2_e0 | homalt | 99.1677 | 99.2070 | 99.1284 | 85.1721 | 1251 | 10 | 1251 | 11 | 6 | 54.5455 | |
| ckim-gatk | INDEL | * | map_l100_m2_e1 | homalt | 99.1806 | 99.2194 | 99.1420 | 85.1980 | 1271 | 10 | 1271 | 11 | 6 | 54.5455 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 32.8326 | 22.5000 | 60.7143 | 91.1532 | 36 | 124 | 34 | 22 | 12 | 54.5455 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 26.6667 | 96.0212 | 0 | 0 | 4 | 11 | 6 | 54.5455 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5364 | 99.2047 | 99.8702 | 65.5442 | 16840 | 135 | 16932 | 22 | 12 | 54.5455 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5364 | 99.2047 | 99.8702 | 65.5442 | 16840 | 135 | 16932 | 22 | 12 | 54.5455 | |
| jpowers-varprowl | SNP | tv | map_l100_m0_e0 | homalt | 98.7169 | 98.0239 | 99.4198 | 69.7608 | 3770 | 76 | 3770 | 22 | 12 | 54.5455 | |
| jpowers-varprowl | INDEL | D1_5 | map_siren | homalt | 96.4427 | 94.0068 | 99.0081 | 73.9977 | 1098 | 70 | 1098 | 11 | 6 | 54.5455 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9538 | 99.9378 | 97.9890 | 60.2085 | 1608 | 1 | 1608 | 33 | 18 | 54.5455 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6790 | 99.4763 | 99.8825 | 56.1108 | 28112 | 148 | 28064 | 33 | 18 | 54.5455 | |
| jli-custom | INDEL | I16_PLUS | HG002compoundhet | het | 74.1746 | 87.2340 | 64.5161 | 91.9481 | 41 | 6 | 20 | 11 | 6 | 54.5455 | |
| jli-custom | SNP | ti | map_l250_m1_e0 | * | 98.2684 | 97.2920 | 99.2647 | 86.0135 | 4455 | 124 | 4455 | 33 | 18 | 54.5455 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.9059 | 99.0142 | 98.7978 | 89.1921 | 904 | 9 | 904 | 11 | 6 | 54.5455 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7214 | 91.1483 | 98.5861 | 64.1475 | 762 | 74 | 767 | 11 | 6 | 54.5455 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | * | 97.6589 | 95.6541 | 99.7497 | 82.8747 | 4380 | 199 | 4383 | 11 | 6 | 54.5455 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7622 | 99.6881 | 99.8364 | 49.1224 | 6712 | 21 | 6714 | 11 | 6 | 54.5455 | |
| astatham-gatk | INDEL | * | map_l100_m2_e0 | homalt | 99.2874 | 99.4449 | 99.1304 | 84.8358 | 1254 | 7 | 1254 | 11 | 6 | 54.5455 | |
| astatham-gatk | INDEL | * | map_l100_m2_e1 | homalt | 99.2985 | 99.4536 | 99.1440 | 84.8877 | 1274 | 7 | 1274 | 11 | 6 | 54.5455 | |
| astatham-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.6948 | 97.7785 | 99.6284 | 69.3550 | 2949 | 67 | 2949 | 11 | 6 | 54.5455 | |
| bgallagher-sentieon | INDEL | D16_PLUS | HG002complexvar | het | 98.0634 | 98.6450 | 97.4886 | 68.5684 | 1092 | 15 | 854 | 22 | 12 | 54.5455 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.9874 | 90.0901 | 98.2372 | 88.6401 | 600 | 66 | 613 | 11 | 6 | 54.5455 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.9874 | 90.0901 | 98.2372 | 88.6401 | 600 | 66 | 613 | 11 | 6 | 54.5455 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8754 | 95.3172 | 96.4401 | 77.6815 | 631 | 31 | 596 | 22 | 12 | 54.5455 | |
| hfeng-pmm1 | SNP | ti | map_l100_m1_e0 | homalt | 99.8580 | 99.8385 | 99.8775 | 60.1505 | 17931 | 29 | 17931 | 22 | 12 | 54.5455 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e0 | homalt | 99.8607 | 99.8416 | 99.8798 | 62.5925 | 18280 | 29 | 18280 | 22 | 12 | 54.5455 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e1 | homalt | 99.8621 | 99.8432 | 99.8810 | 62.5754 | 18465 | 29 | 18465 | 22 | 12 | 54.5455 | |
| hfeng-pmm3 | SNP | ti | map_l100_m1_e0 | homalt | 99.8636 | 99.8497 | 99.8775 | 60.0521 | 17933 | 27 | 17933 | 22 | 12 | 54.5455 | |
| hfeng-pmm3 | SNP | ti | map_l100_m2_e0 | homalt | 99.8662 | 99.8525 | 99.8798 | 62.5049 | 18282 | 27 | 18282 | 22 | 12 | 54.5455 | |
| hfeng-pmm3 | SNP | ti | map_l100_m2_e1 | homalt | 99.8675 | 99.8540 | 99.8810 | 62.4833 | 18467 | 27 | 18467 | 22 | 12 | 54.5455 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 8.3333 | 87.3684 | 0 | 0 | 2 | 22 | 12 | 54.5455 | |
| ckim-isaac | INDEL | D16_PLUS | map_siren | * | 32.6087 | 20.9790 | 73.1707 | 91.1638 | 30 | 113 | 30 | 11 | 6 | 54.5455 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 72.3404 | 78.1609 | 67.3267 | 99.9209 | 68 | 19 | 68 | 33 | 18 | 54.5455 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 68.0898 | 55.0736 | 89.1626 | 33.2237 | 711 | 580 | 362 | 44 | 24 | 54.5455 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 68.0000 | 77.2727 | 60.7143 | 97.3585 | 34 | 10 | 34 | 22 | 12 | 54.5455 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 18.9387 | 11.0818 | 65.0794 | 81.9484 | 42 | 337 | 41 | 22 | 12 | 54.5455 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 77.0340 | 78.5714 | 75.5556 | 99.4804 | 33 | 9 | 34 | 11 | 6 | 54.5455 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.0093 | 96.1111 | 97.9245 | 77.2337 | 519 | 21 | 519 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | homalt | 57.1429 | 52.9412 | 62.0690 | 85.5721 | 18 | 16 | 18 | 11 | 6 | 54.5455 | |