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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
63701-63750 / 86044 show all
cchapple-customINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
82.5297
77.9412
87.6923
96.3565
53155784
50.0000
cchapple-customINDELD16_PLUSmap_l100_m2_e0*
79.4406
78.8889
80.0000
92.4306
711972189
50.0000
cchapple-customINDELD16_PLUSmap_l100_m2_e1*
79.6787
78.3505
81.0526
92.1811
762177189
50.0000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.4409
97.7011
99.1919
60.2410
4251049142
50.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.1404
98.4353
99.8557
31.3181
69211138421
50.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
92.7323
87.5000
98.6301
33.6364
21314421
50.0000
cchapple-customINDELD6_15map_l100_m1_e0het
93.6988
94.4444
92.9648
84.0673
1197185147
50.0000
cchapple-customINDELD6_15map_l100_m2_e0het
93.8735
94.6565
93.1034
84.7712
1247189147
50.0000
cchapple-customINDELD6_15map_l125_m2_e1*
93.4963
92.9688
94.0299
88.4383
119912684
50.0000
cchapple-customINDELD6_15map_l150_m1_e0*
94.6958
94.5205
94.8718
90.3822
6947442
50.0000
cchapple-customINDELD6_15map_l150_m2_e0*
95.2619
95.1220
95.4023
90.4185
7848342
50.0000
cchapple-customINDELD6_15map_sirenhomalt
96.5251
96.1538
96.8992
78.3557
125512542
50.0000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
97.3653
95.6250
99.1701
81.0311
153747842
50.0000
cchapple-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.4518
99.3532
99.5506
74.6799
768588642
50.0000
cchapple-customINDELI1_5map_l125_m0_e0homalt
97.7974
97.3684
98.2301
84.0395
111311121
50.0000
ciseli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
39.9506
39.3669
40.5518
64.0084
485747485711356
50.0703
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
80.3562
86.2869
75.1884
83.1152
12271951397461231
50.1085
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
82.8282
98.9485
71.2246
86.5324
94110948383192
50.1305
ckim-dragenSNPtiHG002complexvar*
99.9317
99.9245
99.9389
17.8695
508052384508287311156
50.1608
gduggal-snapplatSNP*map_l100_m1_e0het
95.1709
95.0043
95.3380
79.9679
4309322664312921091058
50.1660
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
82.7602
77.8800
88.2929
83.1252
21166012255299150
50.1672
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
77.5469
65.0258
96.0400
78.6649
4249522856424901752879
50.1712
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.5469
65.0258
96.0400
78.6649
4249522856424901752879
50.1712
rpoplin-dv42SNP*map_sirenhet
99.5263
99.4010
99.6518
54.9841
9044654590433316159
50.3165
ckim-dragenSNP*HG002complexvar*
99.9301
99.9223
99.9379
19.4552
753795586754278469236
50.3198
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.1911
97.7409
98.6454
80.0759
105572441055914573
50.3448
gduggal-snapplatSNP*map_l100_m2_e0*
95.4808
94.0120
96.9962
77.3300
6953544296955521541085
50.3714
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
93.5407
95.2841
91.8599
48.3177
90724499073804405
50.3731
gduggal-snapplatSNPtvmap_l150_m0_e0het
88.2289
86.2117
90.3428
90.9621
24513922451262132
50.3817
jpowers-varprowlSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.3080
99.3771
99.2391
58.1058
170701071708513166
50.3817
anovak-vgINDEL*map_l250_m2_e1*
67.7462
69.9700
65.6593
96.4861
23310023912563
50.4000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
94.1491
90.4125
98.2078
67.8829
13174139713261242122
50.4132
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.1491
90.4125
98.2078
67.8829
13174139713261242122
50.4132
gduggal-snapplatSNP*map_l100_m2_e1*
95.5097
94.0511
97.0142
77.3448
7029144467031221641091
50.4159
ciseli-customINDEL*map_l150_m0_e0*
63.1351
56.8093
71.0462
94.9719
29222229211960
50.4202
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
79.8732
68.2411
96.2857
80.2619
30341412303311759
50.4274
jpowers-varprowlSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
98.4919
99.8244
97.1944
47.1301
39807398411558
50.4348
anovak-vgSNP*lowcmp_SimpleRepeat_quadTR_11to50*
96.4963
97.0192
95.9791
41.7450
1764154217783745376
50.4698
rpoplin-dv42SNP*map_l100_m2_e1het
99.2783
99.1577
99.3992
66.0072
4650339546491281142
50.5338
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
80.1634
98.6945
67.4912
84.0788
378538218493
50.5435
qzeng-customINDELD16_PLUSHG002compoundhethomalt
6.1856
100.0000
3.1915
36.2712
80618292
50.5495
gduggal-snapplatSNP*map_l100_m1_e0*
95.4122
93.9174
96.9553
75.8528
6799944046801921361080
50.5618
ciseli-customINDEL*segduphet
88.2244
88.4038
88.0457
95.3251
1296170131117890
50.5618
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
87.1392
90.6725
83.8710
73.1533
8368688417086
50.5882
ckim-isaacINDELD1_5HG002complexvar*
94.1980
91.4993
97.0606
47.3235
29934278129752901456
50.6104
jlack-gatkINDEL*HG002complexvarhet
99.3807
99.2967
99.4647
57.6016
4588732545527245124
50.6122
ckim-dragenSNPtvHG002complexvar*
99.9267
99.9175
99.9359
22.5633
24594920324620015880
50.6329
ndellapenna-hhgaSNP*map_l150_m2_e0*
99.0356
98.3329
99.7484
73.8523
31321531313217940
50.6329
ndellapenna-hhgaSNPtimap_l100_m2_e1*
99.3624
98.8906
99.8388
63.3822
48936549489387940
50.6329
ciseli-customINDEL*map_l125_m0_e0het
66.8718
63.0324
71.2092
93.2956
37021737115076
50.6667