PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63651-63700 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | * | map_l250_m0_e0 | homalt | 62.2222 | 56.0000 | 70.0000 | 98.0411 | 14 | 11 | 14 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 55.5556 | 96.1207 | 0 | 0 | 5 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 94.8276 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | func_cds | * | 52.6316 | 41.6667 | 71.4286 | 46.1538 | 5 | 7 | 5 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 54.2636 | 41.6667 | 77.7778 | 88.6076 | 20 | 28 | 21 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 55.8807 | 43.1373 | 79.3103 | 88.0165 | 22 | 29 | 23 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | het | 79.5789 | 72.9730 | 87.5000 | 90.3614 | 27 | 10 | 28 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.2218 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 73.6842 | 70.0000 | 77.7778 | 99.4813 | 7 | 3 | 7 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 97.0149 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 27.6134 | 19.4444 | 47.6190 | 91.1579 | 21 | 87 | 20 | 22 | 11 | 50.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 18.7500 | 11.1111 | 60.0000 | 95.6522 | 3 | 24 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 25.0000 | 20.0000 | 33.3333 | 90.3226 | 1 | 4 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 25.0000 | 20.0000 | 33.3333 | 91.4286 | 1 | 4 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 25.0000 | 20.0000 | 33.3333 | 91.8919 | 1 | 4 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| ciseli-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 41.9948 | 28.0702 | 83.3333 | 91.1330 | 32 | 82 | 30 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 34.1463 | 29.1667 | 41.1765 | 98.8591 | 7 | 17 | 7 | 10 | 5 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 48.9796 | 34.2857 | 85.7143 | 88.7097 | 12 | 23 | 12 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 30.0000 | 20.0000 | 60.0000 | 91.3793 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 30.0000 | 20.0000 | 60.0000 | 92.7536 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 30.0000 | 20.0000 | 60.0000 | 92.8571 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 18.7500 | 11.1111 | 60.0000 | 97.2973 | 3 | 24 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 96.6667 | 0 | 8 | 0 | 2 | 1 | 50.0000 | ||
| ciseli-custom | SNP | * | map_l100_m0_e0 | hetalt | 66.6667 | 56.2500 | 81.8182 | 78.0000 | 9 | 7 | 9 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | hetalt | 53.3333 | 44.4444 | 66.6667 | 85.3659 | 4 | 5 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 65.8537 | 94.7301 | 0 | 0 | 27 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 56.2500 | 94.7798 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 66.6667 | 95.1445 | 0 | 0 | 28 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 56.2500 | 95.3148 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 66.6667 | 95.2435 | 0 | 0 | 28 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 56.2500 | 95.4155 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 55.5556 | 97.1787 | 0 | 0 | 5 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 42.8571 | 97.1660 | 0 | 0 | 3 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 60.0000 | 95.8746 | 0 | 0 | 15 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 47.3684 | 96.0251 | 0 | 0 | 9 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 60.0000 | 96.2687 | 0 | 0 | 15 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 47.3684 | 96.3947 | 0 | 0 | 9 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 61.5385 | 96.2099 | 0 | 0 | 16 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 50.0000 | 96.2963 | 0 | 0 | 10 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 75.0000 | 97.6744 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 66.6667 | 97.8723 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 75.0000 | 97.9434 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 66.6667 | 98.1073 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 75.0000 | 98.0050 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 66.6667 | 98.1595 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 92.6606 | 100.0000 | 86.3248 | 96.3551 | 1 | 0 | 101 | 16 | 8 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.0000 | 100.0000 | 81.8182 | 96.5692 | 1 | 0 | 72 | 16 | 8 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 71.4286 | 94.5596 | 0 | 0 | 15 | 6 | 3 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 62.5000 | 94.5946 | 0 | 0 | 10 | 6 | 3 | 50.0000 | |