PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63201-63250 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | het | 97.7585 | 96.2145 | 99.3528 | 90.0483 | 305 | 12 | 307 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2665 | 99.5098 | 99.0244 | 88.6364 | 203 | 1 | 203 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.2215 | 56 | 4 | 56 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.6292 | 97.7273 | 95.5556 | 94.2602 | 43 | 1 | 43 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3846 | 93.9394 | 96.8750 | 96.3595 | 62 | 4 | 62 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.7033 | 97.7778 | 95.6522 | 95.0378 | 44 | 1 | 44 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3846 | 93.9394 | 96.8750 | 96.4699 | 62 | 4 | 62 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7742 | 97.8261 | 95.7447 | 95.0888 | 45 | 1 | 45 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3740 | 94.1935 | 98.6577 | 81.7625 | 146 | 9 | 147 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7997 | 99.7140 | 99.8855 | 65.5220 | 1743 | 5 | 1745 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | homalt | 99.8506 | 99.8328 | 99.8684 | 64.9624 | 7761 | 13 | 7590 | 10 | 5 | 50.0000 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | homalt | 99.8314 | 99.7996 | 99.8632 | 71.9880 | 4482 | 9 | 4379 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.7015 | 100.0000 | 99.4048 | 74.4681 | 13 | 0 | 334 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 99.3243 | 100.0000 | 98.6577 | 87.6860 | 15 | 0 | 147 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5789 | 99.5842 | 99.5736 | 56.7742 | 479 | 2 | 467 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 99.3243 | 100.0000 | 98.6577 | 87.6860 | 15 | 0 | 147 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7927 | 99.7427 | 99.8427 | 56.7264 | 3877 | 10 | 3809 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | hetalt | 99.3548 | 100.0000 | 98.7179 | 69.3517 | 41 | 0 | 154 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e0 | hetalt | 99.3865 | 100.0000 | 98.7805 | 70.8703 | 42 | 0 | 162 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e1 | hetalt | 99.4012 | 100.0000 | 98.8095 | 70.6294 | 43 | 0 | 166 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m1_e0 | homalt | 99.8200 | 99.7782 | 99.8619 | 70.0620 | 5847 | 13 | 5785 | 8 | 4 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | homalt | 99.8247 | 99.7839 | 99.8655 | 72.1762 | 6004 | 13 | 5941 | 8 | 4 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | homalt | 99.8263 | 99.7860 | 99.8666 | 72.2636 | 6061 | 13 | 5990 | 8 | 4 | 50.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.2459 | 57.4713 | 90.3226 | 99.9104 | 50 | 37 | 56 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | func_cds | * | 98.7421 | 98.7421 | 98.7421 | 37.1542 | 157 | 2 | 157 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | func_cds | het | 98.8372 | 100.0000 | 97.7011 | 43.1373 | 85 | 0 | 85 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | het | 93.7455 | 88.9495 | 99.0881 | 97.0073 | 1304 | 162 | 1304 | 12 | 6 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | het | 74.0091 | 59.8013 | 97.0717 | 73.7610 | 662 | 445 | 663 | 20 | 10 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 73.1222 | 57.8728 | 99.2832 | 78.7023 | 555 | 404 | 554 | 4 | 2 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 78.7591 | 65.2015 | 99.4350 | 82.5616 | 356 | 190 | 352 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 74.4454 | 59.6206 | 99.0826 | 87.0083 | 220 | 149 | 216 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 83.0598 | 71.3760 | 99.3174 | 53.6319 | 2910 | 1167 | 2910 | 20 | 10 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | homalt | 78.8991 | 65.3716 | 99.4859 | 87.5000 | 387 | 205 | 387 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | homalt | 79.4494 | 66.1211 | 99.5074 | 87.9739 | 404 | 207 | 404 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | homalt | 79.4574 | 66.1290 | 99.5146 | 88.0476 | 410 | 210 | 410 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 71.4286 | 59.8086 | 88.6525 | 84.5902 | 125 | 84 | 125 | 16 | 8 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.3267 | 77.8234 | 99.4737 | 73.5744 | 379 | 108 | 378 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 63.7102 | 48.2815 | 93.6306 | 83.3598 | 295 | 316 | 294 | 20 | 10 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 53.3937 | 39.8649 | 80.8219 | 88.1107 | 59 | 89 | 59 | 14 | 7 | 50.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 82.1997 | 70.3008 | 98.9474 | 87.7261 | 187 | 79 | 188 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002compoundhet | het | 45.1327 | 36.1702 | 60.0000 | 92.0635 | 17 | 30 | 18 | 12 | 6 | 50.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 42.4779 | 27.5862 | 92.3077 | 89.5161 | 24 | 63 | 24 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 65.0972 | 48.9985 | 96.9512 | 78.2925 | 318 | 331 | 318 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.5181 | 97.1512 | 99.9239 | 28.2478 | 2660 | 78 | 2627 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | * | tech_badpromoters | * | 93.2795 | 88.5350 | 98.5612 | 47.3485 | 139 | 18 | 137 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | * | tech_badpromoters | het | 93.2432 | 89.6104 | 97.1831 | 51.0345 | 69 | 8 | 69 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.7434 | 80.9524 | 84.6154 | 92.0408 | 34 | 8 | 33 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.6609 | 95.5759 | 99.8390 | 31.3433 | 1253 | 58 | 1240 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | homalt | 95.6116 | 94.1061 | 97.1660 | 88.8033 | 479 | 30 | 480 | 14 | 7 | 50.0000 | |
| gduggal-snapfb | INDEL | * | segdup | hetalt | 81.3718 | 74.6154 | 89.4737 | 97.2915 | 97 | 33 | 34 | 4 | 2 | 50.0000 | |