PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63101-63150 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 67.3077 | 63.6364 | 71.4286 | 98.2673 | 7 | 4 | 10 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 64.2336 | 57.1429 | 73.3333 | 98.2935 | 8 | 6 | 11 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 64.2336 | 57.1429 | 73.3333 | 98.3221 | 8 | 6 | 11 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 14.2857 | 89.2308 | 0 | 1 | 1 | 6 | 3 | 50.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 76.0780 | 63.0208 | 95.9596 | 95.2868 | 121 | 71 | 190 | 8 | 4 | 50.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 73.9161 | 59.7015 | 97.0149 | 91.4650 | 40 | 27 | 65 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 70.0000 | 71.4286 | 0 | 0 | 14 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8211 | 99.9112 | 99.7312 | 57.1511 | 2250 | 2 | 2226 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6500 | 99.6294 | 99.6706 | 40.2309 | 6720 | 25 | 6656 | 22 | 11 | 50.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.5882 | 66.6667 | 75.0000 | 98.1043 | 6 | 3 | 6 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 96.9697 | 0 | 2 | 0 | 2 | 1 | 50.0000 | ||
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3033 | 99.1013 | 99.5062 | 65.8995 | 1213 | 11 | 1209 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5105 | 99.3794 | 99.6419 | 52.1832 | 1121 | 7 | 1113 | 4 | 2 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7261 | 99.8636 | 99.5890 | 49.1643 | 1464 | 2 | 1454 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7726 | 99.6365 | 99.9090 | 41.7859 | 2193 | 8 | 2195 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4343 | 99.0271 | 99.8449 | 39.8008 | 3868 | 38 | 3863 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 62.5000 | 71.4286 | 97.8261 | 5 | 3 | 5 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 95.9184 | 0 | 2 | 0 | 2 | 1 | 50.0000 | ||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5189 | 99.8302 | 99.2095 | 64.3231 | 1764 | 3 | 1757 | 14 | 7 | 50.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.5681 | 83.3333 | 72.5490 | 91.3413 | 35 | 7 | 37 | 14 | 7 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1781 | 98.5667 | 99.7971 | 74.2130 | 2957 | 43 | 2951 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5541 | 99.2049 | 99.9057 | 74.5256 | 2121 | 17 | 2119 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2442 | 98.7151 | 99.7789 | 49.7012 | 3611 | 47 | 3611 | 8 | 4 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.6217 | 88.0000 | 91.3043 | 82.5095 | 44 | 6 | 42 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | homalt | 98.6220 | 98.4283 | 98.8166 | 82.4931 | 501 | 8 | 501 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m1_e0 | homalt | 98.9792 | 98.7775 | 99.1817 | 81.8155 | 1212 | 15 | 1212 | 10 | 5 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e1 | homalt | 98.1595 | 97.5610 | 98.7654 | 88.0266 | 480 | 12 | 480 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 68.6099 | 52.3077 | 99.6743 | 49.0879 | 510 | 465 | 612 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 64.1239 | 47.4286 | 98.9583 | 48.3871 | 166 | 184 | 190 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 95.8763 | 0 | 0 | 0 | 4 | 2 | 50.0000 | ||
| mlin-fermikit | INDEL | D16_PLUS | segdup | * | 83.1087 | 87.9310 | 78.7879 | 94.7577 | 51 | 7 | 52 | 14 | 7 | 50.0000 | |
| mlin-fermikit | INDEL | D1_5 | func_cds | * | 99.0596 | 99.3711 | 98.7500 | 26.2673 | 158 | 1 | 158 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | het | 49.6025 | 41.3793 | 61.9048 | 83.7209 | 12 | 17 | 13 | 8 | 4 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | het | 71.5939 | 64.0625 | 81.1321 | 82.2742 | 41 | 23 | 43 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | het | 73.6724 | 66.1972 | 83.0508 | 83.1909 | 47 | 24 | 49 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | het | 73.6724 | 66.1972 | 83.0508 | 83.7912 | 47 | 24 | 49 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | het | 38.5321 | 30.0000 | 53.8462 | 85.7143 | 6 | 14 | 7 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | het | 48.1928 | 36.3636 | 71.4286 | 91.4634 | 4 | 7 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | het | 40.8163 | 28.5714 | 71.4286 | 92.9293 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | het | 40.8163 | 28.5714 | 71.4286 | 93.0693 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.8330 | 91.6667 | 92.0000 | 89.1775 | 22 | 2 | 23 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 43.6519 | 28.8136 | 90.0000 | 80.0000 | 17 | 42 | 18 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | * | 57.1429 | 54.5455 | 60.0000 | 86.1111 | 6 | 5 | 6 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | het | 66.6667 | 62.5000 | 71.4286 | 82.9268 | 5 | 3 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 40.0000 | 50.0000 | 33.3333 | 89.6552 | 1 | 1 | 1 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 91.4286 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 93.6170 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 72.7273 | 80.0000 | 66.6667 | 93.6842 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m0_e0 | * | 40.0000 | 33.3333 | 50.0000 | 89.7436 | 2 | 4 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 57.1429 | 66.6667 | 50.0000 | 89.1892 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |