PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62901-62950 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | * | 97.2074 | 95.5556 | 98.9175 | 91.4259 | 731 | 34 | 731 | 8 | 4 | 50.0000 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | homalt | 80.5851 | 69.0476 | 96.7517 | 89.5717 | 319 | 143 | 417 | 14 | 7 | 50.0000 | |
| qzeng-custom | INDEL | * | map_l250_m1_e0 | * | 75.5265 | 65.5738 | 89.0411 | 97.9332 | 200 | 105 | 260 | 32 | 16 | 50.0000 | |
| qzeng-custom | INDEL | * | map_l250_m2_e0 | * | 75.8372 | 65.8610 | 89.3750 | 97.9118 | 218 | 113 | 286 | 34 | 17 | 50.0000 | |
| qzeng-custom | INDEL | * | tech_badpromoters | het | 95.0546 | 94.8718 | 95.2381 | 45.4545 | 37 | 2 | 40 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | hetalt | 77.7778 | 100.0000 | 63.6364 | 86.7470 | 1 | 0 | 7 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 94.6667 | 0 | 0 | 2 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 33.3333 | 70.0000 | 0 | 0 | 1 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 80.0000 | 98.8318 | 0 | 0 | 8 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 75.0000 | 98.8604 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 33.3333 | 97.2222 | 0 | 0 | 1 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 90.2393 | 98.2456 | 83.4395 | 66.8543 | 392 | 7 | 393 | 78 | 39 | 50.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.8621 | 75.0000 | 76.7442 | 59.4340 | 6 | 2 | 33 | 10 | 5 | 50.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.4250 | 96.3768 | 98.4962 | 90.6073 | 266 | 10 | 262 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4703 | 99.1784 | 99.7639 | 83.7209 | 845 | 7 | 845 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2090 | 98.8739 | 99.5465 | 84.4225 | 439 | 5 | 439 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0826 | 98.6945 | 99.4737 | 82.8674 | 378 | 5 | 378 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6890 | 99.4621 | 99.9169 | 79.7698 | 2404 | 13 | 2406 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8991 | 99.8789 | 99.9192 | 29.1154 | 2475 | 3 | 2474 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6183 | 99.6183 | 99.6183 | 66.9401 | 522 | 2 | 522 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8619 | 99.8160 | 99.9079 | 64.2822 | 2170 | 4 | 2170 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.8558 | 99.8558 | 99.8558 | 64.1880 | 1385 | 2 | 1385 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8263 | 99.7917 | 99.8610 | 69.1268 | 1437 | 3 | 1437 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8360 | 99.8906 | 99.7814 | 68.9936 | 913 | 1 | 913 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | map_siren | * | 99.5468 | 99.4818 | 99.6119 | 56.8797 | 45692 | 238 | 45686 | 178 | 89 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | homalt | 83.8710 | 76.4706 | 92.8571 | 87.8788 | 26 | 8 | 26 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | * | 93.1619 | 93.1034 | 93.2203 | 93.1949 | 54 | 4 | 55 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 62.6589 | 45.8248 | 99.0431 | 30.1003 | 225 | 266 | 207 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | * | 96.4497 | 95.3216 | 97.6048 | 94.7698 | 163 | 8 | 163 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | het | 95.4545 | 94.5946 | 96.3303 | 94.9373 | 105 | 6 | 105 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 96.7033 | 95.6522 | 97.7778 | 95.0685 | 176 | 8 | 176 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | het | 95.8333 | 95.0413 | 96.6387 | 95.1009 | 115 | 6 | 115 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | * | 96.7213 | 95.6757 | 97.7901 | 95.1552 | 177 | 8 | 177 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | het | 95.8678 | 95.0820 | 96.6667 | 95.1515 | 116 | 6 | 116 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | hetalt | 82.6305 | 73.8095 | 93.8462 | 91.2399 | 62 | 22 | 61 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.4047 | 99.1254 | 97.6945 | 56.8408 | 340 | 3 | 339 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 77.9566 | 64.5649 | 98.3573 | 34.9800 | 512 | 281 | 479 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 95.4545 | 100.0000 | 91.3043 | 34.2857 | 21 | 0 | 21 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | het | 93.2926 | 97.6190 | 89.3333 | 87.2557 | 123 | 3 | 134 | 16 | 8 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8750 | 96.8750 | 96.8750 | 84.6154 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | het | 93.1342 | 96.9466 | 89.6104 | 87.6997 | 127 | 4 | 138 | 16 | 8 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.9231 | 96.9231 | 96.9231 | 85.4911 | 63 | 2 | 63 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | * | 90.1374 | 89.0909 | 91.2088 | 85.8549 | 245 | 30 | 249 | 24 | 12 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.2406 | 95.5224 | 96.9697 | 85.6522 | 64 | 3 | 64 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | het | 93.1730 | 96.8750 | 89.7436 | 89.4452 | 62 | 2 | 70 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | het | 93.0501 | 95.7746 | 90.4762 | 89.6552 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | * | 91.4293 | 90.6250 | 92.2481 | 89.5037 | 116 | 12 | 119 | 10 | 5 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | het | 93.0501 | 95.7746 | 90.4762 | 89.8673 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | * | 92.2524 | 90.6250 | 93.9394 | 93.7262 | 29 | 3 | 31 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m1_e0 | het | 96.5358 | 97.4359 | 95.6522 | 91.9298 | 38 | 1 | 44 | 2 | 1 | 50.0000 | |