PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62751-62800 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 64.5069 | 48.0447 | 98.1308 | 30.0654 | 86 | 93 | 105 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.9784 | 94.5248 | 99.5628 | 57.7562 | 915 | 53 | 911 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | homalt | 78.8863 | 65.6371 | 98.8372 | 75.6719 | 340 | 178 | 340 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e0 | homalt | 79.0960 | 65.9134 | 98.8701 | 77.8750 | 350 | 181 | 350 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | het | 81.9608 | 69.8997 | 99.0521 | 91.9924 | 209 | 90 | 209 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | het | 82.4197 | 70.5502 | 99.0909 | 92.6224 | 218 | 91 | 218 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | het | 82.5046 | 70.6625 | 99.1150 | 92.6095 | 224 | 93 | 224 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_siren | homalt | 84.1104 | 72.9373 | 99.3258 | 73.3293 | 884 | 328 | 884 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.3433 | 50.9434 | 99.3151 | 42.0635 | 270 | 260 | 290 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.0734 | 81.3559 | 96.0000 | 63.2353 | 48 | 11 | 48 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 76.5438 | 63.9344 | 95.3488 | 51.1364 | 39 | 22 | 41 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 84.5429 | 76.4706 | 94.5205 | 47.1014 | 65 | 20 | 69 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.8394 | 80.5907 | 98.9691 | 22.4000 | 191 | 46 | 192 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.8657 | 94.0053 | 99.9057 | 45.5875 | 2117 | 135 | 2119 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.2553 | 94.7939 | 99.8479 | 50.8778 | 1311 | 72 | 1313 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | * | segdup | * | 98.2480 | 96.6046 | 99.9484 | 87.4705 | 27114 | 953 | 27116 | 14 | 7 | 50.0000 | |
| ckim-isaac | SNP | ti | func_cds | * | 99.4788 | 98.9918 | 99.9707 | 19.0273 | 13648 | 139 | 13648 | 4 | 2 | 50.0000 | |
| ckim-isaac | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.8280 | 94.9712 | 98.7588 | 48.1636 | 26553 | 1406 | 26734 | 336 | 168 | 50.0000 | |
| ckim-isaac | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.5585 | 93.7023 | 99.5943 | 53.9683 | 491 | 33 | 491 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.8288 | 94.8353 | 98.9080 | 47.7162 | 1267 | 69 | 1268 | 14 | 7 | 50.0000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.3117 | 82.9268 | 94.4444 | 87.1429 | 34 | 7 | 34 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.3567 | 89.4171 | 99.8741 | 46.5320 | 1580 | 187 | 1586 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7375 | 99.6412 | 99.8341 | 75.9622 | 3610 | 13 | 3610 | 6 | 3 | 50.0000 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.9064 | 99.9065 | 99.9064 | 76.8906 | 2136 | 2 | 2134 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e0 | homalt | 99.2070 | 99.2070 | 99.2070 | 85.1821 | 1251 | 10 | 1251 | 10 | 5 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e1 | homalt | 99.2194 | 99.2194 | 99.2194 | 85.2079 | 1271 | 10 | 1271 | 10 | 5 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | homalt | 99.2136 | 99.2136 | 99.2136 | 87.3235 | 757 | 6 | 757 | 6 | 3 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l125_m2_e1 | homalt | 99.2248 | 99.2248 | 99.2248 | 87.3859 | 768 | 6 | 768 | 6 | 3 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | homalt | 98.9154 | 98.7013 | 99.1304 | 89.0840 | 456 | 6 | 456 | 4 | 2 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l150_m2_e0 | homalt | 98.9583 | 98.7526 | 99.1649 | 89.9349 | 475 | 6 | 475 | 4 | 2 | 50.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.9592 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2375 | 99.0025 | 99.4737 | 82.2678 | 397 | 4 | 378 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 99.2405 | 99.4924 | 98.9899 | 60.4000 | 196 | 1 | 196 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.6443 | 96.0000 | 97.2973 | 64.5933 | 72 | 3 | 72 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4854 | 99.3353 | 99.6359 | 61.3327 | 1644 | 11 | 1642 | 6 | 3 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.3783 | 98.4848 | 96.2963 | 75.6574 | 325 | 5 | 312 | 12 | 6 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 45.6693 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.2376 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.9394 | 90.2913 | 97.8947 | 88.4988 | 186 | 20 | 186 | 4 | 2 | 50.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1963 | 97.6190 | 98.7805 | 79.4486 | 164 | 4 | 162 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4113 | 99.1196 | 99.7048 | 77.3525 | 1351 | 12 | 1351 | 4 | 2 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6855 | 99.5812 | 99.7901 | 80.3667 | 951 | 4 | 951 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.7206 | 65.5340 | 98.5507 | 56.6038 | 135 | 71 | 136 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.3668 | 91.8216 | 99.1968 | 76.6417 | 247 | 22 | 247 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 86.0744 | 114 | 0 | 114 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5420 | 99.6942 | 99.3902 | 83.8741 | 326 | 1 | 326 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5608 | 99.7067 | 99.4152 | 85.0850 | 340 | 1 | 340 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5633 | 99.7085 | 99.4186 | 85.2740 | 342 | 1 | 342 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2443 | 99.4949 | 98.9950 | 87.4921 | 197 | 1 | 197 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2556 | 99.5025 | 99.0099 | 88.8950 | 200 | 1 | 200 | 2 | 1 | 50.0000 | |