PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62601-62650 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 82.6087 | 95.6023 | 0 | 0 | 19 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 71.4286 | 93.0000 | 0 | 0 | 5 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 96.3636 | 96.5300 | 0 | 0 | 53 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 96.3636 | 96.5300 | 0 | 0 | 53 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 98.6111 | 83.5616 | 0 | 0 | 142 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 98.0952 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 77.7778 | 97.8365 | 0 | 0 | 7 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 97.8022 | 96.1813 | 0 | 0 | 89 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 33.3333 | 98.0132 | 0 | 0 | 1 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.2737 | 91.9271 | 98.8732 | 77.2144 | 353 | 31 | 351 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6660 | 81.6092 | 97.0588 | 84.4037 | 71 | 16 | 66 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.1963 | 82.6087 | 94.5946 | 86.1423 | 38 | 8 | 35 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.0528 | 78.8889 | 97.1014 | 85.5649 | 71 | 19 | 67 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.2547 | 79.1667 | 94.7368 | 87.3754 | 38 | 10 | 36 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 86.8020 | 78.3505 | 97.2973 | 84.9899 | 76 | 21 | 72 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1390 | 80.3922 | 95.1220 | 86.7742 | 41 | 10 | 39 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | * | 92.1763 | 86.7133 | 98.3740 | 86.2876 | 124 | 19 | 121 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | * | 94.7368 | 93.1034 | 96.4286 | 92.2971 | 54 | 4 | 54 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | het | 94.5946 | 94.5946 | 94.5946 | 91.9037 | 35 | 2 | 35 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m0_e0 | * | 96.8948 | 94.3548 | 99.5754 | 80.7834 | 468 | 28 | 469 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | * | 95.5142 | 92.0415 | 99.2593 | 85.2378 | 266 | 23 | 268 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6680 | 98.1203 | 99.2218 | 79.3408 | 261 | 5 | 255 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | * | 80.7947 | 70.9302 | 93.8462 | 71.6157 | 61 | 25 | 61 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.8494 | 96.0631 | 99.7034 | 51.2998 | 6637 | 272 | 6724 | 20 | 10 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2265 | 98.7673 | 99.6899 | 57.2281 | 641 | 8 | 643 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3863 | 99.1243 | 99.6497 | 55.8050 | 566 | 5 | 569 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.1881 | 98.5569 | 99.8274 | 68.1681 | 1161 | 17 | 1157 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2308 | 97.0167 | 99.4755 | 56.4489 | 5561 | 171 | 5690 | 30 | 15 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.8149 | 98.0851 | 99.5556 | 59.5687 | 461 | 9 | 448 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0338 | 100.0000 | 98.0861 | 79.6693 | 208 | 0 | 205 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3235 | 99.4208 | 99.2263 | 79.9379 | 515 | 3 | 513 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3401 | 99.4350 | 99.2453 | 81.4685 | 528 | 3 | 526 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3504 | 99.4444 | 99.2565 | 81.6068 | 537 | 3 | 534 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.9474 | 44 | 0 | 44 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.7894 | 45 | 0 | 45 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.8443 | 46 | 0 | 46 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_siren | homalt | 99.5850 | 99.5050 | 99.6653 | 76.7645 | 1206 | 6 | 1191 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6901 | 96.3664 | 99.0506 | 57.6833 | 1273 | 48 | 1252 | 12 | 6 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3617 | 97.6852 | 99.0476 | 60.3025 | 211 | 5 | 208 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 90.3389 | 86.2745 | 94.8052 | 93.0880 | 88 | 14 | 73 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e0 | * | 97.7096 | 95.7641 | 99.7358 | 83.5094 | 7551 | 334 | 7551 | 20 | 10 | 50.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | * | 97.7139 | 95.7932 | 99.7133 | 83.6180 | 7651 | 336 | 7651 | 22 | 11 | 50.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8066 | 99.6337 | 99.9801 | 44.8476 | 10065 | 37 | 10060 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m0_e0 | * | 95.9940 | 92.7007 | 99.5298 | 87.7555 | 1270 | 100 | 1270 | 6 | 3 | 50.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.8511 | 73.0769 | 90.4762 | 94.8655 | 19 | 7 | 19 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.9679 | 70.5882 | 84.6154 | 95.8861 | 12 | 5 | 11 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | * | 97.3892 | 95.1266 | 99.7620 | 81.0778 | 2518 | 129 | 2515 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.7573 | 90.7063 | 99.1870 | 77.2011 | 244 | 25 | 244 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 98.8990 | 21 | 3 | 21 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.4342 | 93.1731 | 99.9319 | 40.7661 | 2907 | 213 | 2936 | 2 | 1 | 50.0000 | |