PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62351-62400 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | * | 93.2039 | 90.5660 | 96.0000 | 91.7492 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m1_e0 | het | 91.5254 | 90.0000 | 93.1034 | 91.9220 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | * | 93.2039 | 90.5660 | 96.0000 | 92.6254 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e0 | het | 91.5254 | 90.0000 | 93.1034 | 92.6209 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e1 | * | 93.2039 | 90.5660 | 96.0000 | 92.8161 | 48 | 5 | 48 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_l125_m2_e1 | het | 91.5254 | 90.0000 | 93.1034 | 92.7500 | 27 | 3 | 27 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_siren | het | 96.7972 | 95.1049 | 98.5507 | 86.5103 | 136 | 7 | 136 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 98.0392 | 97.1503 | 98.9446 | 91.0613 | 375 | 11 | 375 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.9964 | 97.4638 | 98.5348 | 91.1104 | 269 | 7 | 269 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9002 | 99.8860 | 99.9144 | 60.6431 | 7011 | 8 | 7007 | 6 | 3 | 50.0000 | |
| cchapple-custom | INDEL | * | func_cds | * | 98.9926 | 98.8764 | 99.1091 | 40.8432 | 440 | 5 | 445 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.2523 | 106 | 3 | 106 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 94.7441 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 94.8546 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.9969 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1121 | 98.7531 | 99.4737 | 81.8095 | 396 | 5 | 378 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5144 | 99.6757 | 99.3536 | 78.0162 | 1537 | 5 | 1537 | 10 | 5 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 99.2405 | 99.4924 | 98.9899 | 60.4000 | 196 | 1 | 196 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.6443 | 96.0000 | 97.2973 | 64.7619 | 72 | 3 | 72 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4371 | 99.6241 | 99.2509 | 82.1762 | 265 | 1 | 265 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.5038 | 96.4789 | 98.5507 | 46.5116 | 137 | 5 | 136 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.7037 | 95.8333 | 91.6667 | 76.6990 | 23 | 1 | 22 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 97.4138 | 96.5812 | 98.2609 | 91.2080 | 113 | 4 | 113 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8750 | 96.8750 | 96.8750 | 92.7273 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 97.1888 | 96.0317 | 98.3740 | 91.4226 | 121 | 5 | 121 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 96.4539 | 95.7746 | 97.1429 | 92.7611 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 96.8254 | 95.3125 | 98.3871 | 91.5416 | 122 | 6 | 122 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 96.4539 | 95.7746 | 97.1429 | 92.9078 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | segdup | * | 96.0836 | 96.3351 | 95.8333 | 93.8184 | 184 | 7 | 184 | 8 | 4 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.9831 | 94.7154 | 97.2851 | 88.4595 | 233 | 13 | 215 | 6 | 3 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2248 | 98.9691 | 99.4819 | 76.0248 | 384 | 4 | 384 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8024 | 98.8095 | 98.7952 | 79.1980 | 166 | 2 | 164 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 88.8889 | 88.8889 | 88.8889 | 95.1482 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 88.8889 | 88.8889 | 88.8889 | 95.1613 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5960 | 99.4864 | 99.7059 | 77.3522 | 1356 | 7 | 1356 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7906 | 99.7906 | 99.7906 | 80.3781 | 953 | 2 | 953 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.3660 | 65.0485 | 98.5401 | 58.3587 | 134 | 72 | 135 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5649 | 94.0520 | 99.2157 | 76.9231 | 253 | 16 | 253 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 95.7346 | 95.2830 | 96.1905 | 96.1024 | 101 | 5 | 101 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 95.5357 | 94.6903 | 96.3964 | 96.4918 | 107 | 6 | 107 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 95.5752 | 94.7368 | 96.4286 | 96.5770 | 108 | 6 | 108 | 4 | 2 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.6137 | 98.0720 | 99.1614 | 75.6166 | 1933 | 38 | 1892 | 16 | 8 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.6137 | 98.0720 | 99.1614 | 75.6166 | 1933 | 38 | 1892 | 16 | 8 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.2298 | 72.8261 | 97.1014 | 59.1716 | 67 | 25 | 67 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 95.9641 | 93.8596 | 98.1651 | 87.8348 | 107 | 7 | 107 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 94.8276 | 93.2203 | 96.4912 | 88.7352 | 55 | 4 | 55 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 96.0352 | 93.9655 | 98.1982 | 88.6735 | 109 | 7 | 109 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0000 | 93.4426 | 96.6102 | 89.2139 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 96.0352 | 93.9655 | 98.1982 | 88.9442 | 109 | 7 | 109 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0000 | 93.4426 | 96.6102 | 89.4454 | 57 | 4 | 57 | 2 | 1 | 50.0000 | |