PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61401-61450 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e1 | het | 94.3638 | 98.2283 | 90.7919 | 91.5103 | 499 | 9 | 493 | 50 | 22 | 44.0000 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | het | 98.2879 | 97.1825 | 99.4189 | 73.8528 | 4277 | 124 | 4277 | 25 | 11 | 44.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.3468 | 96.4762 | 98.2332 | 41.6856 | 1013 | 37 | 2780 | 50 | 22 | 44.0000 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.5412 | 99.3311 | 95.8146 | 61.4853 | 3861 | 26 | 3846 | 168 | 74 | 44.0476 | |
| gduggal-bwaplat | INDEL | * | * | het | 92.4727 | 86.8430 | 98.8829 | 67.5454 | 168591 | 25542 | 168540 | 1904 | 839 | 44.0651 | |
| gduggal-bwavard | INDEL | C6_15 | HG002complexvar | het | 83.1683 | 100.0000 | 71.1864 | 87.6634 | 4 | 0 | 168 | 68 | 30 | 44.1176 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.5301 | 85.0932 | 80.1170 | 31.8725 | 137 | 24 | 137 | 34 | 15 | 44.1176 | |
| ciseli-custom | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 22.7273 | 96.3272 | 0 | 0 | 10 | 34 | 15 | 44.1176 | |
| ndellapenna-hhga | SNP | * | map_l150_m2_e0 | het | 98.6606 | 97.6854 | 99.6554 | 74.6307 | 19667 | 466 | 19667 | 68 | 30 | 44.1176 | |
| astatham-gatk | SNP | ti | map_l150_m0_e0 | * | 93.2170 | 87.6733 | 99.5090 | 82.5398 | 6892 | 969 | 6890 | 34 | 15 | 44.1176 | |
| gduggal-snapvard | SNP | * | HG002compoundhet | * | 79.9672 | 80.6669 | 79.2796 | 52.8107 | 20829 | 4992 | 20864 | 5453 | 2407 | 44.1408 | |
| jli-custom | SNP | * | HG002complexvar | * | 99.9396 | 99.9065 | 99.9727 | 19.0201 | 753676 | 705 | 753565 | 206 | 91 | 44.1748 | |
| jli-custom | SNP | ti | map_l150_m0_e0 | * | 98.8029 | 98.1682 | 99.4459 | 75.0426 | 7717 | 144 | 7717 | 43 | 19 | 44.1860 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | het | 97.6728 | 97.2258 | 98.1239 | 84.2550 | 2243 | 64 | 2249 | 43 | 19 | 44.1860 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.2797 | 92.2197 | 90.3587 | 46.2002 | 403 | 34 | 403 | 43 | 19 | 44.1860 | |
| egarrison-hhga | SNP | tv | map_l100_m1_e0 | * | 99.4963 | 99.1715 | 99.8233 | 63.2033 | 24298 | 203 | 24298 | 43 | 19 | 44.1860 | |
| ckim-isaac | INDEL | D1_5 | map_siren | * | 88.4097 | 80.1927 | 98.5028 | 77.5975 | 2830 | 699 | 2829 | 43 | 19 | 44.1860 | |
| gduggal-snapplat | INDEL | I6_15 | * | homalt | 35.4854 | 25.0841 | 60.6230 | 61.9684 | 1565 | 4674 | 1518 | 986 | 436 | 44.2191 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 59.2431 | 51.8849 | 69.0334 | 76.6255 | 16296 | 15112 | 21147 | 9486 | 4195 | 44.2231 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 59.2431 | 51.8849 | 69.0334 | 76.6255 | 16296 | 15112 | 21147 | 9486 | 4195 | 44.2231 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 63.4692 | 61.7158 | 65.3251 | 67.3472 | 4122 | 2557 | 5746 | 3050 | 1349 | 44.2295 | |
| gduggal-snapfb | SNP | ti | map_l250_m0_e0 | * | 93.6877 | 92.6277 | 94.7722 | 93.6399 | 1269 | 101 | 1269 | 70 | 31 | 44.2857 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6359 | 97.7403 | 99.5481 | 71.8594 | 15225 | 352 | 15420 | 70 | 31 | 44.2857 | |
| ckim-dragen | INDEL | I6_15 | * | het | 98.9990 | 98.7043 | 99.2956 | 59.4838 | 9903 | 130 | 9867 | 70 | 31 | 44.2857 | |
| gduggal-snapplat | INDEL | I6_15 | HG002complexvar | homalt | 34.0455 | 24.6293 | 55.1181 | 60.1881 | 299 | 915 | 280 | 228 | 101 | 44.2982 | |
| egarrison-hhga | SNP | * | map_siren | * | 99.6583 | 99.4385 | 99.8791 | 53.8224 | 145407 | 821 | 145408 | 176 | 78 | 44.3182 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.4770 | 96.4561 | 94.5176 | 45.8743 | 6505 | 239 | 6603 | 383 | 170 | 44.3864 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9052 | 99.8917 | 99.9188 | 56.2157 | 11072 | 12 | 11068 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | homalt | 99.1509 | 99.4758 | 98.8281 | 86.7266 | 759 | 4 | 759 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e1 | homalt | 99.1629 | 99.4832 | 98.8447 | 86.8279 | 770 | 4 | 770 | 9 | 4 | 44.4444 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8950 | 99.8510 | 99.9390 | 54.8240 | 14748 | 22 | 14750 | 9 | 4 | 44.4444 | |
| asubramanian-gatk | SNP | ti | HG002complexvar | * | 98.3380 | 96.7457 | 99.9835 | 17.8536 | 491890 | 16546 | 491830 | 81 | 36 | 44.4444 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | het | 70.3504 | 81.8182 | 61.7021 | 97.9322 | 27 | 6 | 29 | 18 | 8 | 44.4444 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | * | 72.2457 | 74.2690 | 70.3297 | 96.0219 | 127 | 44 | 128 | 54 | 24 | 44.4444 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2818 | 98.6207 | 97.9452 | 69.3920 | 429 | 6 | 429 | 9 | 4 | 44.4444 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.6351 | 98.0293 | 99.2485 | 64.1671 | 9501 | 191 | 9509 | 72 | 32 | 44.4444 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | * | 99.5683 | 99.2846 | 99.8537 | 64.5157 | 49131 | 354 | 49132 | 72 | 32 | 44.4444 | |
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | * | 98.7333 | 97.8816 | 99.6000 | 88.1610 | 4482 | 97 | 4482 | 18 | 8 | 44.4444 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e0 | * | 99.2922 | 98.8287 | 99.7600 | 74.2574 | 11222 | 133 | 11222 | 27 | 12 | 44.4444 | |
| egarrison-hhga | SNP | tv | map_l150_m2_e1 | * | 99.3012 | 98.8437 | 99.7631 | 74.2719 | 11369 | 133 | 11369 | 27 | 12 | 44.4444 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 84.3305 | 80.0000 | 89.1566 | 86.2583 | 76 | 19 | 74 | 9 | 4 | 44.4444 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.2319 | 85.0000 | 87.5000 | 86.9801 | 136 | 24 | 126 | 18 | 8 | 44.4444 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 83.7209 | 87.8049 | 80.0000 | 82.0000 | 36 | 5 | 36 | 9 | 4 | 44.4444 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.9870 | 92.7725 | 99.4322 | 50.3135 | 1566 | 122 | 1576 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5993 | 99.5000 | 99.6988 | 76.7994 | 2985 | 15 | 2979 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 96.3989 | 44 | 2 | 43 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.9670 | 95.8333 | 83.0189 | 96.8187 | 46 | 2 | 44 | 9 | 4 | 44.4444 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e1 | het | 89.5935 | 96.0784 | 83.9286 | 96.7136 | 49 | 2 | 47 | 9 | 4 | 44.4444 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5978 | 99.3202 | 99.8769 | 36.6057 | 7305 | 50 | 7301 | 9 | 4 | 44.4444 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4081 | 99.2523 | 99.5645 | 82.9173 | 4115 | 31 | 4115 | 18 | 8 | 44.4444 | |