PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61251-61300 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | * | map_l100_m2_e0 | homalt | 99.1696 | 99.4449 | 98.8959 | 84.6359 | 1254 | 7 | 1254 | 14 | 6 | 42.8571 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | homalt | 99.1826 | 99.4536 | 98.9130 | 84.6885 | 1274 | 7 | 1274 | 14 | 6 | 42.8571 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6218 | 100.0000 | 99.2465 | 77.6468 | 922 | 0 | 922 | 7 | 3 | 42.8571 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3958 | 98.0100 | 98.7847 | 72.5975 | 591 | 12 | 569 | 7 | 3 | 42.8571 | |
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | homalt | 96.2599 | 93.3170 | 99.3945 | 84.7554 | 1145 | 82 | 1149 | 7 | 3 | 42.8571 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5348 | 97.9369 | 99.1400 | 71.5584 | 807 | 17 | 807 | 7 | 3 | 42.8571 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 79.3685 | 71.2644 | 89.5522 | 70.7424 | 62 | 25 | 60 | 7 | 3 | 42.8571 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8835 | 99.8894 | 99.8776 | 53.9498 | 17158 | 19 | 17135 | 21 | 9 | 42.8571 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3270 | 99.3199 | 99.3340 | 66.8350 | 3067 | 21 | 3132 | 21 | 9 | 42.8571 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | * | 70.0000 | 73.6842 | 66.6667 | 41.6667 | 14 | 5 | 14 | 7 | 3 | 42.8571 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6964 | 99.7792 | 99.6138 | 75.7541 | 3615 | 8 | 3611 | 14 | 6 | 42.8571 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | homalt | 97.6490 | 98.0354 | 97.2656 | 84.3281 | 499 | 10 | 498 | 14 | 6 | 42.8571 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7914 | 99.7547 | 99.8281 | 43.5620 | 4067 | 10 | 4065 | 7 | 3 | 42.8571 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0173 | 98.5075 | 99.5324 | 77.0540 | 1518 | 23 | 1490 | 7 | 3 | 42.8571 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8389 | 99.9596 | 99.7185 | 33.2528 | 2477 | 1 | 2480 | 7 | 3 | 42.8571 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7823 | 99.7440 | 99.8206 | 33.3561 | 3896 | 10 | 3895 | 7 | 3 | 42.8571 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8503 | 99.8005 | 99.9001 | 62.4759 | 7005 | 14 | 7001 | 7 | 3 | 42.8571 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | het | 84.2881 | 73.9489 | 97.9885 | 86.2255 | 1706 | 601 | 1705 | 35 | 15 | 42.8571 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.9238 | 72.7273 | 86.2745 | 96.2583 | 32 | 12 | 44 | 7 | 3 | 42.8571 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 93.7322 | 93.1624 | 94.3089 | 88.0234 | 109 | 8 | 116 | 7 | 3 | 42.8571 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 94.1710 | 93.6508 | 94.6970 | 88.3082 | 118 | 8 | 125 | 7 | 3 | 42.8571 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 51.8908 | 43.1818 | 65.0000 | 89.0710 | 19 | 25 | 13 | 7 | 3 | 42.8571 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | * | 76.6610 | 62.7615 | 98.4683 | 90.0131 | 450 | 267 | 450 | 7 | 3 | 42.8571 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e0 | * | 76.9968 | 63.1717 | 98.5685 | 90.5306 | 482 | 281 | 482 | 7 | 3 | 42.8571 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e1 | * | 76.8627 | 62.9820 | 98.5915 | 90.5369 | 490 | 288 | 490 | 7 | 3 | 42.8571 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3958 | 98.0100 | 98.7847 | 73.2093 | 591 | 12 | 569 | 7 | 3 | 42.8571 | |
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3357 | 98.9921 | 99.6817 | 59.1116 | 35062 | 357 | 35070 | 112 | 48 | 42.8571 | |
| egarrison-hhga | SNP | * | map_l100_m0_e0 | het | 99.1151 | 98.5051 | 99.7326 | 69.3594 | 20888 | 317 | 20889 | 56 | 24 | 42.8571 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5483 | 99.3850 | 99.7121 | 48.3425 | 2424 | 15 | 2424 | 7 | 3 | 42.8571 | |
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | * | 97.8160 | 96.6013 | 99.0617 | 92.0849 | 739 | 26 | 739 | 7 | 3 | 42.8571 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e0 | homalt | 99.0099 | 99.1277 | 98.8924 | 84.9649 | 1250 | 11 | 1250 | 14 | 6 | 42.8571 | |
| dgrover-gatk | INDEL | * | map_l100_m2_e1 | homalt | 99.0253 | 99.1413 | 98.9097 | 85.0193 | 1270 | 11 | 1270 | 14 | 6 | 42.8571 | |
| ckim-isaac | SNP | ti | segdup | * | 98.3830 | 96.8521 | 99.9630 | 86.8421 | 18922 | 615 | 18922 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | het | 97.4111 | 98.0685 | 96.7625 | 68.1401 | 30362 | 598 | 30366 | 1016 | 436 | 42.9134 | |
| anovak-vg | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.3819 | 93.7500 | 91.0531 | 69.7462 | 3045 | 203 | 3104 | 305 | 131 | 42.9508 | |
| ckim-isaac | INDEL | * | map_siren | * | 85.3582 | 75.5331 | 98.1215 | 78.4772 | 5597 | 1813 | 5589 | 107 | 46 | 42.9907 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.8091 | 96.9639 | 87.1747 | 63.5912 | 511 | 16 | 1407 | 207 | 89 | 42.9952 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | het | 96.4331 | 97.5578 | 95.3341 | 73.4403 | 28602 | 716 | 28605 | 1400 | 602 | 43.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9145 | 97.8347 | 97.9944 | 55.0665 | 4202 | 93 | 4202 | 86 | 37 | 43.0233 | |
| hfeng-pmm2 | INDEL | D1_5 | * | het | 99.5604 | 99.3114 | 99.8107 | 56.3200 | 86971 | 603 | 86977 | 165 | 71 | 43.0303 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.6003 | 96.5481 | 90.8273 | 56.5817 | 3636 | 130 | 3634 | 367 | 158 | 43.0518 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.6003 | 96.5481 | 90.8273 | 56.5817 | 3636 | 130 | 3634 | 367 | 158 | 43.0518 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 81.0114 | 86.8467 | 75.9109 | 68.6846 | 1479 | 224 | 1500 | 476 | 205 | 43.0672 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e0 | het | 97.3939 | 98.0537 | 96.7430 | 68.0809 | 30026 | 596 | 30030 | 1011 | 436 | 43.1256 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.1125 | 83.1756 | 93.6725 | 88.6078 | 791 | 160 | 755 | 51 | 22 | 43.1373 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | * | 96.8640 | 96.8959 | 96.8321 | 72.7854 | 43920 | 1407 | 43924 | 1437 | 620 | 43.1454 | |
| rpoplin-dv42 | SNP | ti | segdup | * | 99.7773 | 99.7799 | 99.7748 | 89.3733 | 19494 | 43 | 19492 | 44 | 19 | 43.1818 | |
| ndellapenna-hhga | INDEL | D6_15 | * | homalt | 95.9125 | 97.7395 | 94.1526 | 53.1263 | 6183 | 143 | 6183 | 384 | 166 | 43.2292 | |
| ndellapenna-hhga | SNP | tv | map_l125_m1_e0 | het | 98.8001 | 97.9854 | 99.6285 | 68.0340 | 9922 | 204 | 9922 | 37 | 16 | 43.2432 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m1_e0 | * | 98.9175 | 98.0418 | 99.8089 | 66.8010 | 19326 | 386 | 19329 | 37 | 16 | 43.2432 | |