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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
60951-61000 / 86044 show all
ciseli-customSNP*HG002complexvarhomalt
96.2605
98.9760
93.6900
21.2638
2856202955278961187887728
41.1326
ckim-isaacINDEL*map_l100_m1_e0het
83.9386
73.4228
97.9701
85.4069
164159416413414
41.1765
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
75.3538
61.4299
97.4398
87.5188
653410647177
41.1765
gduggal-bwaplatINDELD1_5map_l100_m2_e0*
82.9800
71.5405
98.7743
92.0775
13705451370177
41.1765
gduggal-bwaplatINDELD1_5map_l100_m2_e1*
82.9443
71.4801
98.7883
92.1357
13865531386177
41.1765
gduggal-bwaplatSNP*map_l150_m0_e0het
60.8863
43.9547
99.0352
95.3638
3490445034903414
41.1765
gduggal-bwavardINDEL*map_l100_m1_e0*
90.3615
92.9448
87.9179
87.2169
33332533340459189
41.1765
eyeh-varpipeSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.4574
99.5649
99.3502
34.3868
2746122599177
41.1765
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.3524
95.1444
95.5614
69.5669
725377323414
41.1765
hfeng-pmm1SNPtimap_l125_m1_e0homalt
99.8143
99.7827
99.8460
66.1307
110212411021177
41.1765
hfeng-pmm1SNPtimap_l125_m2_e0homalt
99.8195
99.7887
99.8502
68.6124
113342411334177
41.1765
hfeng-pmm1SNPtimap_l125_m2_e1homalt
99.8210
99.7905
99.8515
68.6411
114342411434177
41.1765
ckim-vqsrSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2430
99.1304
99.3558
84.2935
2622232622177
41.1765
egarrison-hhgaINDEL*map_l150_m0_e0*
96.1909
95.7198
96.6667
99.1616
49222493177
41.1765
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.0644
85.9330
96.8475
84.2543
207734020896828
41.1765
gduggal-snapplatSNPtvmap_l250_m2_e1het
86.0422
82.0356
90.4602
95.1420
1612353161217070
41.1765
gduggal-snapvardSNPtifunc_cds*
99.4321
99.1151
99.7511
27.3375
13665122136283414
41.1765
astatham-gatkSNP*HG002complexvarhet
98.7010
97.4496
99.9850
18.8713
453625118724534986828
41.1765
qzeng-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
79.2418
93.0939
68.9781
57.8721
33725945425175
41.1765
qzeng-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
82.7455
87.5000
78.4810
39.4636
2131243414
41.1765
qzeng-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.6831
99.5234
99.8433
60.8736
108595210830177
41.1765
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
92.2021
88.9542
95.6962
86.1888
757947563414
41.1765
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.1991
98.6599
99.7442
50.1650
6626906628177
41.1765
jmaeng-gatkSNP*HG002complexvar*
99.5566
99.1508
99.9656
19.5091
7479756406747823257106
41.2451
gduggal-bwavardINDEL*map_l100_m2_e0*
90.5115
93.0138
88.1404
88.0002
34352583441463191
41.2527
rpoplin-dv42SNPtvmap_l100_m2_e1het
99.1406
99.1781
99.1032
66.6722
158071311580314359
41.2587
qzeng-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.2899
99.2769
99.3030
49.7051
961789766326
41.2698
gduggal-bwavardSNPtilowcmp_SimpleRepeat_diTR_11to50*
94.8869
95.0176
94.7566
72.8903
45962414554252104
41.2698
gduggal-snapvardSNPtiHG002compoundhethet
77.4625
83.1755
72.4839
53.3720
79051599909634531426
41.2974
gduggal-bwavardSNP*lowcmp_SimpleRepeat_diTR_11to50het
94.1916
95.2534
93.1533
76.2686
59402965864431178
41.2993
ckim-dragenINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8088
99.7806
99.8371
58.7309
2819862281924619
41.3043
asubramanian-gatkINDELD1_5*het
99.3754
99.1025
99.6499
59.9427
8678878686804305126
41.3115
qzeng-customINDELI6_15**
88.1501
86.9073
89.4289
48.1019
2157332502164025581057
41.3213
eyeh-varpipeSNP*HG002compoundhethomalt
97.1233
99.4992
94.8583
47.6589
1072854361619681
41.3265
gduggal-bwafbSNPtvHG002complexvar*
99.7871
99.7453
99.8289
23.3366
245528627245605421174
41.3302
ltrigg-rtg2INDEL***
99.2539
98.8759
99.6347
56.1284
34066838733404111248516
41.3462
anovak-vgINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
15.0284
9.6078
34.4828
60.5442
1471383140266110
41.3534
anovak-vgINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
15.0284
9.6078
34.4828
60.5442
1471383140266110
41.3534
gduggal-snapplatSNPtvmap_l250_m1_e0*
85.6503
79.4862
92.8508
94.0020
2104543210416267
41.3580
gduggal-snapplatSNPtvmap_l250_m1_e0het
85.2855
81.0856
89.9441
94.8591
1449338144916267
41.3580
gduggal-snapplatINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
31.6644
21.5926
59.3458
76.4835
1415121278736
41.3793
gduggal-bwavardINDELC6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
59.7222
96.2284
00432912
41.3793
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
76.5888
63.9069
95.5499
83.7077
37362110373617472
41.3793
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
76.5888
63.9069
95.5499
83.7077
37362110373617472
41.3793
egarrison-hhgaSNPtvmap_l125_m1_e0het
99.1809
98.6569
99.7105
68.8561
999013699902912
41.3793
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.2488
96.4929
90.2158
52.0822
30541113052331137
41.3897
mlin-fermikitINDEL*map_l125_m2_e0het
67.2880
52.1927
94.6684
82.7849
7266657284117
41.4634
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.4808
99.3427
99.6193
80.0419
1073071107304117
41.4634
jpowers-varprowlSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.4333
99.6568
93.4119
74.1305
17426174412351
41.4634
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
69.4882
58.7467
85.0365
91.8258
2251582334117
41.4634