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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1215 1216 1217 1218 1219 1220 1221 1222 1223 ... 1720 1721 » 60901-60950 / 86044 show all
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	95.4728	95.2120	95.7351	40.3377	4872	245	4871	217	88	40.5530
egarrison-hhga	SNP	*	map_l125_m1_e0	het	99.2263	98.7039	99.7544	69.9636	28024	368	28024	69	28	40.5797
gduggal-snapfb	SNP	tv	map_l150_m1_e0	het	95.6989	97.3798	94.0751	75.4297	6764	182	6764	426	173	40.6103
ckim-isaac	INDEL	I16_PLUS	HG002complexvar	homalt	50.1099	36.8932	78.0822	66.5138	114	195	114	32	13	40.6250
ndellapenna-hhga	SNP	tv	map_l150_m2_e0	het	98.5727	97.6145	99.5500	73.8403	7079	173	7079	32	13	40.6250
ndellapenna-hhga	SNP	tv	map_l150_m2_e1	het	98.5776	97.6184	99.5559	73.8732	7173	175	7173	32	13	40.6250
ndellapenna-hhga	INDEL	*	map_l100_m1_e0	het	97.2839	97.4049	97.1631	83.0935	2177	58	2192	64	26	40.6250
rpoplin-dv42	INDEL	*	map_l125_m1_e0	*	98.0229	97.5795	98.4704	98.6389	2056	51	2060	32	13	40.6250
rpoplin-dv42	INDEL	*	map_l125_m2_e0	*	98.0800	97.6321	98.5321	98.7156	2144	52	2148	32	13	40.6250
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	*	56.1021	47.7477	68.0000	49.7487	106	116	136	64	26	40.6250
astatham-gatk	SNP	ti	map_l125_m0_e0	het	89.1339	80.7092	99.5223	81.9410	6669	1594	6667	32	13	40.6250
gduggal-snapvard	INDEL	*	map_l125_m2_e0	*	85.9487	92.0310	80.6206	88.8530	2021	175	2754	662	269	40.6344
ndellapenna-hhga	SNP	ti	map_l100_m1_e0	het	99.0953	98.4002	99.8002	62.6312	29463	479	29465	59	24	40.6780
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	74.9889	82.2562	68.9015	82.7699	1451	313	1819	821	334	40.6821
ltrigg-rtg1	SNP	tv	HG002complexvar	*	99.8396	99.7384	99.9410	21.7226	245511	644	245768	145	59	40.6897
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	92.7491	96.2553	89.4894	50.3947	2699	105	2699	317	129	40.6940
anovak-vg	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.3610	98.4844	98.2380	45.9412	6173	95	6300	113	46	40.7080
gduggal-snapvard	INDEL	D1_5	map_l100_m1_e0	*	88.9711	94.4264	84.1118	85.2613	1745	103	2197	415	169	40.7229
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	het	93.4478	94.6950	92.2330	77.5820	2981	167	2945	248	101	40.7258
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	94.8534	92.9705	96.8142	85.5904	1640	124	1641	54	22	40.7407
anovak-vg	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	97.9774	97.8472	98.1079	69.1926	1409	31	1400	27	11	40.7407
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	31.1863	26.6694	37.5453	73.7371	643	1768	933	1552	633	40.7861
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	92.3833	95.4225	89.5317	74.6685	813	39	650	76	31	40.7895
gduggal-bwavard	INDEL	*	map_l100_m1_e0	het	89.9219	98.1208	82.9876	89.4070	2193	42	2200	451	184	40.7982
gduggal-snapfb	SNP	*	map_l150_m1_e0	homalt	97.1242	94.8195	99.5437	79.7473	10689	584	10689	49	20	40.8163
gduggal-snapfb	SNP	*	map_l150_m2_e0	homalt	97.2134	94.9739	99.5609	80.8017	11111	588	11111	49	20	40.8163
gduggal-snapfb	SNP	*	map_l150_m2_e1	homalt	97.2353	95.0114	99.5658	80.8094	11237	590	11237	49	20	40.8163
ciseli-custom	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	86.5017	92.8720	80.9492	77.3758	30866	2369	31282	7362	3006	40.8313
anovak-vg	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	95.3736	96.4849	94.2876	62.2229	34174	1245	35108	2127	869	40.8557
ckim-gatk	INDEL	*	*	het	99.4669	99.6616	99.2730	62.2737	193476	657	193095	1414	578	40.8769
gduggal-bwavard	INDEL	*	map_l100_m2_e0	het	90.0912	98.0928	83.2966	90.0573	2263	44	2269	455	186	40.8791
gduggal-snapvard	INDEL	D1_5	map_l100_m2_e0	*	89.1114	94.4125	84.3738	85.7309	1808	107	2284	423	173	40.8983
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7130	99.7766	99.6495	46.4322	6254	14	6254	22	9	40.9091
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	97.5926	96.9745	98.2186	79.0180	1218	38	1213	22	9	40.9091
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.9186	98.5743	99.2654	69.9659	2973	43	2973	22	9	40.9091
ciseli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	92.4417	95.1488	89.8844	58.8124	15632	797	15630	1759	720	40.9323
qzeng-custom	INDEL	I1_5	HG002complexvar	het	98.6121	98.1362	99.0926	55.1360	17850	339	18675	171	70	40.9357
gduggal-snapvard	INDEL	C6_15	lowcmp_SimpleRepeat_diTR_11to50	*	0.0000	0.0000	47.2362	89.5263	0	0	94	105	43	40.9524
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	90.8048	89.3111	92.3494	45.1133	3267	391	4092	339	139	41.0029
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	89.4551	92.2272	86.8448	82.4170	6348	535	6760	1024	420	41.0156
ndellapenna-hhga	SNP	tv	map_l125_m2_e1	het	98.8154	98.0195	99.6244	69.7483	10344	209	10344	39	16	41.0256
jpowers-varprowl	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4182	99.4576	99.3789	47.3459	6234	34	6240	39	16	41.0256
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	97.7777	96.0123	99.6093	42.4195	9992	415	9942	39	16	41.0256
anovak-vg	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	94.8371	96.1907	93.5210	57.8026	17171	680	17740	1229	505	41.0903
gduggal-snapplat	SNP	ti	*	homalt	99.4971	99.0644	99.9337	17.3977	795526	7513	795327	528	217	41.0985
anovak-vg	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	95.8647	96.7839	94.9628	65.9014	17003	565	17476	927	381	41.1003
asubramanian-gatk	INDEL	*	*	het	98.9698	98.6849	99.2562	61.7813	191580	2553	191238	1433	589	41.1026
ciseli-custom	INDEL	C6_15	HG002complexvar	homalt	0.0000	0.0000	19.6429	91.7708	0	0	22	90	37	41.1111
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	86.5531	82.3858	91.1644	45.8288	12984	2776	21554	2089	859	41.1202
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	55.6919	47.1555	68.0020	66.7689	15086	16906	17977	8459	3479	41.1278

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