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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1214 1215 1216 1217 1218 1219 1220 1221 1222 ... 1720 1721 » 60851-60900 / 86044 show all
hfeng-pmm1	INDEL	I1_5	map_l100_m2_e1	*	98.7398	98.2079	99.2775	83.4529	1370	25	1374	10	4	40.0000
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.5883	90.0626	99.5930	87.0976	2447	270	2447	10	4	40.0000
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	91.8622	85.4308	99.3408	88.0041	1507	257	1507	10	4	40.0000
hfeng-pmm1	SNP	*	map_l125_m1_e0	homalt	99.8048	99.7870	99.8225	66.5790	16869	36	16869	30	12	40.0000
hfeng-pmm1	SNP	*	map_l125_m2_e0	homalt	99.8100	99.7928	99.8273	69.0265	17339	36	17339	30	12	40.0000
hfeng-pmm1	SNP	*	map_l125_m2_e1	homalt	99.8117	99.7947	99.8288	69.0610	17496	36	17496	30	12	40.0000
hfeng-pmm1	SNP	ti	map_l100_m0_e0	homalt	99.7619	99.7170	99.8069	63.0178	7752	22	7752	15	6	40.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6231	99.4357	99.8113	69.4243	2643	15	2645	5	2	40.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8403	99.7607	99.9201	44.1798	6253	15	6253	5	2	40.0000
hfeng-pmm2	SNP	ti	map_l125_m0_e0	homalt	99.6883	99.7105	99.6661	69.9826	4478	13	4478	15	6	40.0000
hfeng-pmm2	SNP	ti	map_l250_m0_e0	homalt	99.0847	99.3119	98.8584	92.1786	433	3	433	5	2	40.0000
hfeng-pmm3	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2169	98.7151	99.7238	50.1102	3611	47	3611	10	4	40.0000
hfeng-pmm3	INDEL	*	map_l100_m2_e0	homalt	99.2469	99.2863	99.2076	82.1525	1252	9	1252	10	4	40.0000
hfeng-pmm3	INDEL	*	map_l100_m2_e1	homalt	99.2587	99.2974	99.2200	82.2364	1272	9	1272	10	4	40.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	98.3153	96.9789	99.6891	57.4040	1605	50	1603	5	2	40.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.2356	91.2621	97.4093	87.4594	188	18	188	5	2	40.0000
hfeng-pmm3	INDEL	I1_5	map_l125_m0_e0	*	98.5533	98.7097	98.3974	87.4598	306	4	307	5	2	40.0000
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6122	99.3198	99.9063	37.9962	10659	73	10659	10	4	40.0000
hfeng-pmm3	SNP	ti	map_l100_m0_e0	homalt	99.7684	99.7299	99.8069	62.9000	7753	21	7753	15	6	40.0000
hfeng-pmm3	SNP	ti	map_l150_m1_e0	homalt	99.7816	99.7680	99.7952	70.9268	7310	17	7310	15	6	40.0000
hfeng-pmm3	SNP	ti	map_l150_m2_e0	homalt	99.7899	99.7768	99.8030	73.1277	7599	17	7599	15	6	40.0000
hfeng-pmm3	SNP	ti	map_l150_m2_e1	homalt	99.7920	99.7790	99.8050	73.1684	7676	17	7676	15	6	40.0000
hfeng-pmm3	SNP	ti	map_l250_m0_e0	homalt	99.0847	99.3119	98.8584	92.1463	433	3	433	5	2	40.0000
gduggal-snapfb	SNP	tv	map_l125_m0_e0	het	94.9693	96.7280	93.2734	75.1430	4257	144	4257	307	123	40.0651
gduggal-snapfb	SNP	tv	map_l150_m2_e0	het	95.8184	97.4766	94.2156	77.2326	7069	183	7069	434	174	40.0922
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	78.4461	79.6640	77.2650	73.1213	4078	1041	4068	1197	480	40.1003
gduggal-snapvard	INDEL	I1_5	map_l125_m1_e0	het	88.6113	98.7654	80.3504	90.3081	480	6	642	157	63	40.1274
anovak-vg	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.6034	98.8995	98.3091	54.0884	6021	67	6221	107	43	40.1869
gduggal-snapvard	INDEL	C6_15	HG002complexvar	*	72.1017	100.0000	56.3743	72.3480	4	0	482	373	150	40.2145
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	71.5265	61.2613	85.9244	78.5005	408	258	409	67	27	40.2985
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	71.5265	61.2613	85.9244	78.5005	408	258	409	67	27	40.2985
ndellapenna-hhga	INDEL	*	map_l100_m2_e1	het	97.2372	97.3111	97.1634	84.0911	2280	63	2295	67	27	40.2985
gduggal-snapvard	INDEL	D1_5	map_l100_m2_e1	*	88.9679	94.1723	84.3087	85.8664	1826	113	2305	429	173	40.3263
gduggal-snapvard	INDEL	I1_5	map_l125_m1_e0	*	90.5689	94.8193	86.6832	88.0250	787	43	1048	161	65	40.3727
dgrover-gatk	SNP	tv	HG002complexvar	het	99.9396	99.9138	99.9655	21.5720	150601	130	150525	52	21	40.3846
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	46.0973	30.8671	90.9962	43.3225	534	1196	475	47	19	40.4255
gduggal-bwavard	INDEL	I1_5	map_l125_m1_e0	het	94.3995	98.1481	90.9266	90.6464	477	9	471	47	19	40.4255
jmaeng-gatk	INDEL	D1_5	*	*	99.3810	99.3322	99.4300	61.6387	145765	980	145820	836	338	40.4306
ltrigg-rtg2	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1175	98.9995	99.2358	63.1487	5541	56	5454	42	17	40.4762
mlin-fermikit	INDEL	*	map_l125_m2_e1	het	67.5834	52.5568	94.6429	82.8559	740	668	742	42	17	40.4762
egarrison-hhga	SNP	*	map_l125_m0_e0	het	98.9341	98.2154	99.6635	75.5931	12438	226	12438	42	17	40.4762
asubramanian-gatk	SNP	ti	HG002compoundhet	*	98.1691	96.6358	99.7519	35.8566	16890	588	16888	42	17	40.4762
egarrison-hhga	SNP	*	HG002complexvar	het	99.7873	99.6172	99.9580	18.3902	463715	1782	463738	195	79	40.5128
ndellapenna-hhga	INDEL	D1_5	map_siren	het	98.4865	98.5946	98.3786	78.7325	2245	32	2245	37	15	40.5405
gduggal-snapvard	INDEL	*	map_l125_m2_e1	*	85.9747	92.0000	80.6901	88.9628	2047	178	2783	666	270	40.5405
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.3852	99.0251	99.7479	54.5094	14626	144	14641	37	15	40.5405
gduggal-snapfb	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.4911	99.5894	99.3930	57.8569	6063	25	6059	37	15	40.5405
ltrigg-rtg1	SNP	*	map_l150_m0_e0	*	98.1003	96.5675	99.6825	69.8517	11619	413	11615	37	15	40.5405
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.2560	99.0686	99.4441	78.7870	6595	62	6619	37	15	40.5405
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.0491	98.9618	99.1365	81.8417	4194	44	4248	37	15	40.5405

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