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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
60801-60850 / 86044 show all
astatham-gatkSNPtimap_l250_m1_e0*
92.9011
87.3116
99.2552
90.3133
399858139983012
40.0000
astatham-gatkSNPtimap_l250_m2_e0*
92.8085
87.1006
99.3169
90.7841
436264643623012
40.0000
astatham-gatkSNPtimap_l250_m2_e1*
92.8549
87.1749
99.3266
90.8364
442565144253012
40.0000
asubramanian-gatkINDEL*map_l100_m0_e0homalt
95.2090
91.7485
98.9407
86.3268
4674246752
40.0000
astatham-gatkINDELD16_PLUSmap_l100_m1_e0het
86.6603
93.4783
80.7692
95.8031
43342104
40.0000
astatham-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.8025
94.1748
97.4874
88.3010
1941219452
40.0000
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.3238
99.2366
99.4111
74.7171
1690131688104
40.0000
ltrigg-rtg1INDELC6_15HG002complexvar*
99.3197
100.0000
98.6486
84.1134
4036552
40.0000
jmaeng-gatkINDELD16_PLUSsegdup*
94.1176
96.5517
91.8033
97.0113
5625652
40.0000
jmaeng-gatkINDELD16_PLUSsegduphet
93.3333
100.0000
87.5000
97.4260
3703552
40.0000
jmaeng-gatkINDELD6_15segdup*
95.0392
95.2880
94.7917
95.0541
1829182104
40.0000
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
92.3674
89.4737
95.4545
87.9781
1191410552
40.0000
jli-customINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.5484
95.0820
92.0635
90.0943
5835852
40.0000
jli-customINDELI1_5map_l125_m0_e0*
98.5507
98.7097
98.3923
87.2069
306430652
40.0000
jli-customINDELI1_5map_l125_m1_e0*
99.2158
99.0361
99.3961
84.2466
822882352
40.0000
jli-customINDELI1_5map_l125_m2_e0*
99.1816
98.9498
99.4145
85.5524
848984952
40.0000
jli-customINDELI1_5map_l125_m2_e1*
99.1939
98.9655
99.4233
85.7143
861986252
40.0000
jli-customINDELI1_5map_l150_m1_e0*
98.9129
98.8142
99.0119
87.8511
500650152
40.0000
jli-customINDELI1_5map_l150_m2_e0*
98.8426
98.6513
99.0347
89.1016
512751352
40.0000
jli-customINDELI1_5map_l150_m2_e1*
98.8688
98.6817
99.0566
89.1616
524752552
40.0000
jli-customINDELI1_5segdup*
99.3377
99.1501
99.5261
94.0200
10509105052
40.0000
jli-customINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
95.1490
92.7126
97.7169
78.3168
2291821452
40.0000
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.1341
99.1132
99.1550
87.2227
2347212347208
40.0000
jli-customSNPtiHG002compoundhethet
99.6793
99.7265
99.6321
39.4553
94792694793514
40.0000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.5057
97.2851
97.7273
90.8676
215621552
40.0000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.3856
98.0263
96.7532
91.1341
149314952
40.0000
jpowers-varprowlINDELD1_5map_l100_m0_e0homalt
95.6349
93.4109
97.9675
78.7565
2411724152
40.0000
jpowers-varprowlINDELD1_5map_l100_m1_e0homalt
95.8115
92.7365
99.0975
76.8491
5494354952
40.0000
jpowers-varprowlINDELD1_5map_l125_m0_e0*
94.8537
94.7581
94.9495
88.5760
470264702510
40.0000
jpowers-varprowlINDELD1_5map_l150_m0_e0*
94.4444
94.1176
94.7735
91.6932
27217272156
40.0000
jmaeng-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.7817
98.0847
99.4888
71.9690
9731997352
40.0000
jmaeng-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8072
99.6609
99.9540
61.5860
10874371087052
40.0000
ltrigg-rtg1INDELD1_5map_l150_m1_e0*
96.8582
94.5607
99.2701
82.3545
6783968052
40.0000
ltrigg-rtg1INDELD1_5map_l150_m2_e0*
97.0527
94.8886
99.3179
83.4836
7243972852
40.0000
ltrigg-rtg1INDELD1_5map_l150_m2_e1*
97.0436
94.8586
99.3316
83.4403
7384074352
40.0000
ltrigg-rtg1SNPtimap_l150_m2_e0*
98.9478
98.1084
99.8017
69.1640
20124388201284016
40.0000
ltrigg-rtg1SNPtvmap_l100_m0_e0homalt
99.7918
99.7140
99.8697
63.2094
383511383352
40.0000
ltrigg-rtg1SNPtvmap_l250_m1_e0het
96.2660
93.0610
99.6997
76.8718
1663124166052
40.0000
jlack-gatkINDELD16_PLUSmap_l100_m1_e0homalt
78.7879
86.6667
72.2222
94.9861
1321352
40.0000
jlack-gatkINDELD16_PLUSmap_l100_m2_e0homalt
80.0000
87.5000
73.6842
95.5916
1421452
40.0000
jlack-gatkINDELD16_PLUSmap_l100_m2_e1homalt
80.0000
87.5000
73.6842
95.6221
1421452
40.0000
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5296
99.5296
99.5296
81.1592
10585105852
40.0000
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5374
99.6524
99.4226
63.8866
860386152
40.0000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
97.3116
97.6190
97.0060
78.0552
164416252
40.0000
hfeng-pmm1SNPtimap_l150_m1_e0homalt
99.7748
99.7543
99.7952
71.0227
7309187309156
40.0000
hfeng-pmm1SNPtimap_l150_m2_e0homalt
99.7833
99.7637
99.8030
73.2106
7598187598156
40.0000
hfeng-pmm1SNPtimap_l150_m2_e1homalt
99.7855
99.7660
99.8049
73.2531
7675187675156
40.0000
hfeng-pmm1SNPtimap_l250_m0_e0homalt
99.0847
99.3119
98.8584
92.1786
433343352
40.0000
hfeng-pmm1INDELI1_5map_l100_m1_e0*
98.7628
98.2823
99.2481
82.0270
1316231320104
40.0000
hfeng-pmm1INDELI1_5map_l100_m2_e0*
98.7520
98.2456
99.2636
83.3619
1344241348104
40.0000