PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60751-60800 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8284 | 99.7474 | 99.9096 | 58.5102 | 11056 | 28 | 11052 | 10 | 4 | 40.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4448 | 99.3729 | 99.5169 | 82.8933 | 4120 | 26 | 4120 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.9907 | 84.0382 | 99.1974 | 59.7025 | 616 | 117 | 618 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | * | 77.9687 | 64.4993 | 98.5486 | 87.4682 | 1359 | 748 | 1358 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | * | 78.3417 | 64.9818 | 98.6169 | 88.3010 | 1427 | 769 | 1426 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | * | 78.4183 | 65.0787 | 98.6367 | 88.3507 | 1448 | 777 | 1447 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l150_m1_e0 | het | 77.5665 | 64.0936 | 98.2111 | 92.0336 | 548 | 307 | 549 | 10 | 4 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l150_m2_e0 | het | 77.6228 | 64.1280 | 98.3108 | 92.5120 | 581 | 325 | 582 | 10 | 4 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l150_m2_e1 | het | 77.5885 | 64.0693 | 98.3389 | 92.5319 | 592 | 332 | 592 | 10 | 4 | 40.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | * | 96.5632 | 96.0227 | 97.1098 | 92.4056 | 169 | 7 | 168 | 5 | 2 | 40.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.5425 | 92.0000 | 89.1304 | 86.2687 | 46 | 4 | 41 | 5 | 2 | 40.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 87.7958 | 95.6522 | 81.1321 | 96.3322 | 44 | 2 | 43 | 10 | 4 | 40.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.0766 | 95.8333 | 81.4815 | 96.7606 | 46 | 2 | 44 | 10 | 4 | 40.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 88.7476 | 96.0784 | 82.4561 | 96.6569 | 49 | 2 | 47 | 10 | 4 | 40.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.0545 | 97.4227 | 98.6945 | 75.5740 | 378 | 10 | 378 | 5 | 2 | 40.0000 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 66.6667 | 0 | 1 | 0 | 5 | 2 | 40.0000 | ||
| ciseli-custom | SNP | tv | HG002compoundhet | hetalt | 90.1141 | 82.4826 | 99.3017 | 17.9840 | 711 | 151 | 711 | 5 | 2 | 40.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3643 | 99.3432 | 95.4628 | 84.4394 | 605 | 4 | 526 | 25 | 10 | 40.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6744 | 99.8915 | 99.4583 | 77.8018 | 921 | 1 | 918 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.7582 | 92.4731 | 97.1591 | 69.7074 | 172 | 14 | 171 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.6667 | 88.5714 | 97.1591 | 68.0581 | 31 | 4 | 171 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I6_15 | map_siren | * | 96.0396 | 95.4098 | 96.6777 | 83.6945 | 291 | 14 | 291 | 10 | 4 | 40.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9260 | 99.9343 | 99.9177 | 51.2440 | 6084 | 4 | 6070 | 5 | 2 | 40.0000 | |
| ciseli-custom | INDEL | * | func_cds | het | 79.1762 | 80.8411 | 77.5785 | 43.6869 | 173 | 41 | 173 | 50 | 20 | 40.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 94.6237 | 0 | 0 | 5 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8610 | 100.0000 | 97.7477 | 93.4222 | 1 | 0 | 217 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.3498 | 100.0000 | 96.7532 | 93.7525 | 1 | 0 | 149 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 72.2222 | 96.5714 | 0 | 0 | 13 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 68.7500 | 96.2963 | 0 | 0 | 11 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 75.0000 | 80.0000 | 70.5882 | 91.0995 | 12 | 3 | 12 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 76.4706 | 81.2500 | 72.2222 | 91.8552 | 13 | 3 | 13 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 76.4706 | 81.2500 | 72.2222 | 91.8919 | 13 | 3 | 13 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.5134 | 92.4528 | 98.7835 | 71.4781 | 98 | 8 | 406 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_siren | * | 96.0947 | 97.6744 | 94.5652 | 91.4736 | 84 | 2 | 87 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6263 | 91.4498 | 98.0315 | 68.7192 | 246 | 23 | 249 | 5 | 2 | 40.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 44.4444 | 92.5620 | 0 | 0 | 4 | 5 | 2 | 40.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 93.3775 | 0 | 0 | 5 | 5 | 2 | 40.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 44.4444 | 90.3226 | 0 | 0 | 4 | 5 | 2 | 40.0000 | |
| ciseli-custom | SNP | * | HG002compoundhet | hetalt | 90.1141 | 82.4826 | 99.3017 | 17.9840 | 711 | 151 | 711 | 5 | 2 | 40.0000 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | het | 64.3289 | 71.6981 | 58.3333 | 98.2533 | 38 | 15 | 42 | 30 | 12 | 40.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 83.8725 | 78.8462 | 89.5833 | 67.1233 | 41 | 11 | 43 | 5 | 2 | 40.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | het | 72.2986 | 81.1475 | 65.1899 | 96.1529 | 99 | 23 | 103 | 55 | 22 | 40.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.5446 | 93.6893 | 97.4747 | 88.2562 | 193 | 13 | 193 | 5 | 2 | 40.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9847 | 98.6372 | 99.3347 | 77.0324 | 1520 | 21 | 1493 | 10 | 4 | 40.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | segdup | * | 94.1176 | 96.5517 | 91.8033 | 96.8893 | 56 | 2 | 56 | 5 | 2 | 40.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | segdup | het | 93.3333 | 100.0000 | 87.5000 | 97.2640 | 37 | 0 | 35 | 5 | 2 | 40.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.6791 | 97.8831 | 99.4882 | 71.3069 | 971 | 21 | 972 | 5 | 2 | 40.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.5583 | 99.5229 | 99.5937 | 62.9090 | 11055 | 53 | 11030 | 45 | 18 | 40.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.5425 | 92.0000 | 89.1304 | 86.3905 | 46 | 4 | 41 | 5 | 2 | 40.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3053 | 98.6647 | 99.9543 | 56.5280 | 10936 | 148 | 10933 | 5 | 2 | 40.0000 | |