PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60051-60100 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | * | 97.1639 | 96.4981 | 97.8389 | 90.4125 | 496 | 18 | 498 | 11 | 4 | 36.3636 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.7132 | 76.4249 | 60.7843 | 87.7538 | 295 | 91 | 341 | 220 | 80 | 36.3636 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.2655 | 90.8046 | 87.7778 | 94.9153 | 79 | 8 | 79 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.1148 | 93.7500 | 79.6296 | 96.2211 | 45 | 3 | 43 | 11 | 4 | 36.3636 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 86.8949 | 94.1176 | 80.7018 | 96.1039 | 48 | 3 | 46 | 11 | 4 | 36.3636 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1886 | 98.1028 | 98.2745 | 88.1406 | 1241 | 24 | 1253 | 22 | 8 | 36.3636 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.9086 | 95.6522 | 79.6296 | 95.3807 | 44 | 2 | 43 | 11 | 4 | 36.3636 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 86.1163 | 83.9286 | 88.4211 | 59.0164 | 141 | 27 | 420 | 55 | 20 | 36.3636 | |
| qzeng-custom | INDEL | I1_5 | segdup | * | 97.9371 | 97.9226 | 97.9516 | 94.4656 | 1037 | 22 | 1052 | 22 | 8 | 36.3636 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7041 | 99.4765 | 99.9327 | 57.5361 | 16343 | 86 | 16341 | 11 | 4 | 36.3636 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | * | 97.1607 | 94.6100 | 99.8528 | 80.6416 | 7460 | 425 | 7460 | 11 | 4 | 36.3636 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | * | 97.1847 | 94.6538 | 99.8547 | 80.7686 | 7560 | 427 | 7560 | 11 | 4 | 36.3636 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | * | 97.4722 | 97.1774 | 97.7688 | 87.3525 | 482 | 14 | 482 | 11 | 4 | 36.3636 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5220 | 99.3296 | 99.7152 | 58.2062 | 3852 | 26 | 3852 | 11 | 4 | 36.3636 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.7114 | 85.5263 | 92.1429 | 90.3448 | 130 | 22 | 129 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6364 | 89.6552 | 87.6404 | 92.1793 | 78 | 9 | 78 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.0110 | 90.0000 | 88.0435 | 93.0983 | 81 | 9 | 81 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.2308 | 89.6907 | 88.7755 | 92.8467 | 87 | 10 | 87 | 11 | 4 | 36.3636 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | het | 63.1579 | 66.6667 | 60.0000 | 93.0991 | 32 | 16 | 33 | 22 | 8 | 36.3636 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | het | 67.0857 | 51.2397 | 97.1204 | 79.0685 | 372 | 354 | 371 | 11 | 4 | 36.3636 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | het | 68.6425 | 53.0105 | 97.3494 | 80.9546 | 405 | 359 | 404 | 11 | 4 | 36.3636 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | het | 68.8482 | 53.2468 | 97.3810 | 81.0640 | 410 | 360 | 409 | 11 | 4 | 36.3636 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | het | 97.8094 | 98.2609 | 97.3621 | 87.4018 | 339 | 6 | 406 | 11 | 4 | 36.3636 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 77.7114 | 64.9157 | 96.7899 | 84.6384 | 1001 | 541 | 995 | 33 | 12 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | * | 55.5556 | 66.6667 | 47.6190 | 92.3913 | 10 | 5 | 10 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | het | 57.1429 | 88.8889 | 42.1053 | 92.5490 | 8 | 1 | 8 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | * | 69.0909 | 76.0000 | 63.3333 | 93.1350 | 19 | 6 | 19 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | * | 69.0909 | 76.0000 | 63.3333 | 94.0358 | 19 | 6 | 19 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | * | 71.1864 | 77.7778 | 65.6250 | 93.8697 | 21 | 6 | 21 | 11 | 4 | 36.3636 | |
| egarrison-hhga | SNP | ti | map_l125_m2_e1 | het | 99.2602 | 98.7583 | 99.7671 | 71.8965 | 18850 | 237 | 18850 | 44 | 16 | 36.3636 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 85.7754 | 93.4783 | 79.2453 | 95.6699 | 43 | 3 | 42 | 11 | 4 | 36.3636 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.8876 | 91.9540 | 87.9121 | 95.3737 | 80 | 7 | 80 | 11 | 4 | 36.3636 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e0 | * | 90.2174 | 92.2222 | 88.2979 | 95.8952 | 83 | 7 | 83 | 11 | 4 | 36.3636 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e1 | * | 90.3553 | 91.7526 | 89.0000 | 95.7301 | 89 | 8 | 89 | 11 | 4 | 36.3636 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m1_e0 | * | 98.0764 | 97.9437 | 98.2094 | 82.9273 | 1810 | 38 | 1810 | 33 | 12 | 36.3636 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e0 | * | 98.1438 | 98.0157 | 98.2723 | 83.6389 | 1877 | 38 | 1877 | 33 | 12 | 36.3636 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | * | 80.7640 | 68.5979 | 98.1758 | 85.4699 | 592 | 271 | 592 | 11 | 4 | 36.3636 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.4334 | 99.3865 | 99.4804 | 79.7057 | 4212 | 26 | 4212 | 22 | 8 | 36.3636 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3219 | 95.4262 | 99.2945 | 64.0832 | 17004 | 815 | 17030 | 121 | 44 | 36.3636 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4424 | 96.0934 | 98.8298 | 71.9151 | 1894 | 77 | 1858 | 22 | 8 | 36.3636 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4424 | 96.0934 | 98.8298 | 71.9151 | 1894 | 77 | 1858 | 22 | 8 | 36.3636 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.0950 | 99.1848 | 99.0054 | 86.2506 | 1095 | 9 | 1095 | 11 | 4 | 36.3636 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8235 | 99.1667 | 98.4828 | 87.3627 | 714 | 6 | 714 | 11 | 4 | 36.3636 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7075 | 98.2437 | 99.1757 | 52.7025 | 2685 | 48 | 2647 | 22 | 8 | 36.3636 | |
| ciseli-custom | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 88.2263 | 0 | 0 | 0 | 77 | 28 | 36.3636 | ||
| ckim-gatk | INDEL | D6_15 | segdup | * | 95.3368 | 96.3351 | 94.3590 | 94.9729 | 184 | 7 | 184 | 11 | 4 | 36.3636 | |
| ciseli-custom | INDEL | I16_PLUS | map_siren | * | 11.6505 | 6.9767 | 35.2941 | 93.5115 | 6 | 80 | 6 | 11 | 4 | 36.3636 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7368 | 98.6330 | 98.8409 | 85.1301 | 938 | 13 | 938 | 11 | 4 | 36.3636 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7253 | 99.7681 | 99.6824 | 38.1649 | 3442 | 8 | 3453 | 11 | 4 | 36.3636 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6745 | 99.8597 | 99.4900 | 40.5130 | 2135 | 3 | 2146 | 11 | 4 | 36.3636 | |