PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59601-59650 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | homalt | 99.6815 | 99.6571 | 99.7060 | 73.9183 | 4069 | 14 | 4069 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e1 | homalt | 99.6855 | 99.6613 | 99.7096 | 73.9141 | 4120 | 14 | 4120 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5350 | 99.4806 | 99.5894 | 54.0098 | 3639 | 19 | 3638 | 15 | 5 | 33.3333 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5588 | 99.3397 | 99.7789 | 76.7478 | 1354 | 9 | 1354 | 3 | 1 | 33.3333 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5441 | 97.3505 | 99.7673 | 60.9276 | 1286 | 35 | 1286 | 3 | 1 | 33.3333 | |
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6849 | 99.5423 | 99.8279 | 67.4388 | 1740 | 8 | 1740 | 3 | 1 | 33.3333 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8222 | 99.6798 | 99.9650 | 55.3292 | 17122 | 55 | 17119 | 6 | 2 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.9120 | 94.3289 | 99.6406 | 81.3092 | 2495 | 150 | 2495 | 9 | 3 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l100_m0_e0 | homalt | 99.6880 | 99.6880 | 99.6880 | 65.5500 | 3834 | 12 | 3834 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | homalt | 99.5050 | 99.5498 | 99.4602 | 72.5691 | 2211 | 10 | 2211 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l150_m1_e0 | homalt | 99.7086 | 99.7212 | 99.6960 | 71.9235 | 3935 | 11 | 3935 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e0 | homalt | 99.7184 | 99.7306 | 99.7062 | 74.0814 | 4072 | 11 | 4072 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | homalt | 99.7219 | 99.7339 | 99.7098 | 74.0785 | 4123 | 11 | 4123 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5833 | 96.4750 | 98.7173 | 74.8085 | 2080 | 76 | 2078 | 27 | 9 | 33.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4214 | 99.0232 | 99.8227 | 73.4004 | 5069 | 50 | 5067 | 9 | 3 | 33.3333 | |
| hfeng-pmm3 | INDEL | * | segdup | * | 99.3329 | 99.0219 | 99.6459 | 93.8860 | 2531 | 25 | 2533 | 9 | 3 | 33.3333 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 90.3904 | 93.4783 | 87.5000 | 94.1889 | 43 | 3 | 42 | 6 | 2 | 33.3333 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.3306 | 97.5600 | 99.1136 | 75.7051 | 2399 | 60 | 2348 | 21 | 7 | 33.3333 | |
| jli-custom | INDEL | * | map_l100_m2_e0 | * | 98.4246 | 98.0774 | 98.7742 | 83.9477 | 3622 | 71 | 3626 | 45 | 15 | 33.3333 | |
| jli-custom | INDEL | * | map_l100_m2_e1 | * | 98.4239 | 98.0564 | 98.7942 | 84.0281 | 3683 | 73 | 3687 | 45 | 15 | 33.3333 | |
| jli-custom | INDEL | * | map_l125_m1_e0 | * | 98.5968 | 98.3389 | 98.8561 | 85.7695 | 2072 | 35 | 2074 | 24 | 8 | 33.3333 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | * | 91.2281 | 89.6552 | 92.8571 | 92.4866 | 78 | 9 | 78 | 6 | 2 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5753 | 98.5294 | 98.6213 | 85.3547 | 1072 | 16 | 1073 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e0 | * | 98.6439 | 98.6002 | 98.6877 | 86.0337 | 1127 | 16 | 1128 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | * | 98.6603 | 98.6171 | 98.7035 | 86.0971 | 1141 | 16 | 1142 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | * | 98.3275 | 98.3264 | 98.3287 | 87.8326 | 705 | 12 | 706 | 12 | 4 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 98.4283 | 98.4273 | 98.4293 | 88.4102 | 751 | 12 | 752 | 12 | 4 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_siren | * | 99.1919 | 99.0649 | 99.3191 | 79.7902 | 3496 | 33 | 3501 | 24 | 8 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8439 | 99.4186 | 98.2759 | 80.9001 | 171 | 1 | 171 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7893 | 99.0291 | 98.5507 | 71.3594 | 816 | 8 | 816 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 83.3333 | 86.2069 | 80.6452 | 94.7428 | 75 | 12 | 75 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 83.7549 | 91.3043 | 77.3585 | 95.9726 | 42 | 4 | 41 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8710 | 86.6667 | 81.2500 | 95.3033 | 78 | 12 | 78 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.3889 | 91.6667 | 78.1818 | 96.3648 | 44 | 4 | 43 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 84.4221 | 86.5979 | 82.3529 | 95.1126 | 84 | 13 | 84 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 85.2524 | 92.1569 | 79.3103 | 96.2435 | 47 | 4 | 46 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 60.0000 | 75.0000 | 50.0000 | 98.1763 | 3 | 1 | 3 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 66.6667 | 80.0000 | 57.1429 | 98.2278 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 80.0000 | 57.1429 | 98.2412 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6198 | 99.6956 | 99.5441 | 80.5441 | 655 | 2 | 655 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5663 | 99.6528 | 99.4801 | 69.4386 | 574 | 2 | 574 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6929 | 100.0000 | 99.3878 | 67.4419 | 487 | 0 | 487 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | HG002complexvar | het | 98.7797 | 98.0451 | 99.5253 | 64.0909 | 652 | 13 | 629 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.8643 | 95.7447 | 94.0000 | 79.3388 | 45 | 2 | 47 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4613 | 24 | 2 | 24 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4752 | 24 | 2 | 24 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.4292 | 98.1557 | 98.7041 | 82.3820 | 479 | 9 | 457 | 6 | 2 | 33.3333 | |
| hfeng-pmm1 | SNP | ti | map_l150_m0_e0 | homalt | 99.6199 | 99.6740 | 99.5658 | 75.8370 | 2752 | 9 | 2752 | 12 | 4 | 33.3333 | |
| hfeng-pmm1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.0879 | 96.4380 | 99.7952 | 66.9971 | 1462 | 54 | 1462 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | homalt | 99.6880 | 99.6880 | 99.6880 | 65.4385 | 3834 | 12 | 3834 | 12 | 4 | 33.3333 | |