PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58751-58800 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 71.2981 | 57.7309 | 93.2011 | 73.4101 | 2300 | 1684 | 2303 | 168 | 53 | 31.5476 | |
| gduggal-snapfb | SNP | * | map_siren | het | 98.1134 | 98.8438 | 97.3936 | 60.3479 | 89939 | 1052 | 89942 | 2407 | 760 | 31.5746 | |
| gduggal-snapfb | SNP | * | map_l150_m0_e0 | homalt | 95.7170 | 92.6388 | 99.0068 | 86.9094 | 3788 | 301 | 3788 | 38 | 12 | 31.5789 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | het | 99.3933 | 98.9779 | 99.8123 | 65.4669 | 30309 | 313 | 30310 | 57 | 18 | 31.5789 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e1 | * | 98.3578 | 98.3578 | 98.3578 | 86.6797 | 1138 | 19 | 1138 | 19 | 6 | 31.5789 | |
| ckim-isaac | SNP | tv | map_l100_m2_e1 | * | 75.8227 | 61.1518 | 99.7549 | 67.3250 | 15461 | 9822 | 15464 | 38 | 12 | 31.5789 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.2817 | 99.2817 | 99.2817 | 83.4450 | 2626 | 19 | 2626 | 19 | 6 | 31.5789 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 77.9385 | 92.6829 | 67.2414 | 94.0695 | 38 | 3 | 39 | 19 | 6 | 31.5789 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 73.1343 | 58.3082 | 98.0711 | 75.8578 | 965 | 690 | 966 | 19 | 6 | 31.5789 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | het | 98.1609 | 98.4416 | 97.8818 | 85.3694 | 758 | 12 | 878 | 19 | 6 | 31.5789 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m0_e0 | het | 92.9247 | 96.9325 | 89.2351 | 90.6242 | 316 | 10 | 315 | 38 | 12 | 31.5789 | |
| cchapple-custom | INDEL | I1_5 | map_siren | het | 97.7116 | 97.5610 | 97.8628 | 81.6928 | 1640 | 41 | 1740 | 38 | 12 | 31.5789 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.1138 | 99.2021 | 95.1115 | 61.2625 | 1119 | 9 | 1109 | 57 | 18 | 31.5789 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | * | 97.3822 | 96.9873 | 97.7804 | 83.9188 | 837 | 26 | 837 | 19 | 6 | 31.5789 | |
| gduggal-snapfb | SNP | * | map_siren | * | 98.4685 | 98.6644 | 98.2733 | 60.5270 | 144275 | 1953 | 144278 | 2535 | 801 | 31.5976 | |
| jpowers-varprowl | SNP | ti | map_l100_m1_e0 | * | 98.2270 | 97.7259 | 98.7332 | 68.5176 | 46841 | 1090 | 46843 | 601 | 190 | 31.6140 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | het | 99.3648 | 98.9461 | 99.7870 | 65.4283 | 45910 | 489 | 45911 | 98 | 31 | 31.6327 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8536 | 98.8377 | 98.8695 | 82.8620 | 6803 | 80 | 6909 | 79 | 25 | 31.6456 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 51.3343 | 37.8608 | 79.6954 | 89.2663 | 446 | 732 | 471 | 120 | 38 | 31.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.3412 | 97.9740 | 96.7165 | 46.4205 | 3385 | 70 | 2975 | 101 | 32 | 31.6832 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | * | 97.5848 | 98.0422 | 97.1318 | 71.7053 | 24788 | 495 | 24789 | 732 | 232 | 31.6940 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | het | 87.9923 | 98.4375 | 79.5511 | 91.6753 | 189 | 3 | 319 | 82 | 26 | 31.7073 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.8999 | 98.0990 | 99.7140 | 75.1504 | 14294 | 277 | 14294 | 41 | 13 | 31.7073 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.8999 | 98.0990 | 99.7140 | 75.1504 | 14294 | 277 | 14294 | 41 | 13 | 31.7073 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | het | 99.3093 | 98.8845 | 99.7379 | 65.3478 | 15601 | 176 | 15601 | 41 | 13 | 31.7073 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | het | 99.3132 | 98.8894 | 99.7405 | 65.3943 | 15761 | 177 | 15761 | 41 | 13 | 31.7073 | |
| gduggal-snapvard | SNP | ti | segdup | * | 98.3714 | 97.5175 | 99.2403 | 92.6560 | 19052 | 485 | 18941 | 145 | 46 | 31.7241 | |
| jli-custom | SNP | ti | map_l125_m1_e0 | het | 99.1158 | 98.8065 | 99.4270 | 68.8246 | 18048 | 218 | 18046 | 104 | 33 | 31.7308 | |
| ndellapenna-hhga | INDEL | I1_5 | HG002complexvar | het | 98.8489 | 98.2847 | 99.4197 | 54.6026 | 17877 | 312 | 17818 | 104 | 33 | 31.7308 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e0 | het | 83.2747 | 87.6592 | 79.3079 | 85.1214 | 1101 | 155 | 1123 | 293 | 93 | 31.7406 | |
| anovak-vg | INDEL | D1_5 | map_l100_m2_e1 | het | 83.2523 | 87.6183 | 79.3007 | 85.1706 | 1111 | 157 | 1134 | 296 | 94 | 31.7568 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | * | 89.9579 | 95.1613 | 85.2941 | 90.0943 | 295 | 15 | 493 | 85 | 27 | 31.7647 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 24.1770 | 18.1983 | 36.0063 | 77.7972 | 1107 | 4976 | 1374 | 2442 | 776 | 31.7772 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | * | 97.5647 | 98.0226 | 97.1111 | 71.6649 | 24538 | 495 | 24539 | 730 | 232 | 31.7808 | |
| jli-custom | SNP | * | map_l150_m1_e0 | het | 98.8306 | 98.4521 | 99.2121 | 72.9358 | 19017 | 299 | 19014 | 151 | 48 | 31.7881 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 82.1636 | 88.4927 | 76.6793 | 63.1888 | 3599 | 468 | 3847 | 1170 | 372 | 31.7949 | |
| jlack-gatk | SNP | * | HG002complexvar | het | 99.8914 | 99.8855 | 99.8973 | 19.1615 | 464964 | 533 | 464834 | 478 | 152 | 31.7992 | |
| ndellapenna-hhga | SNP | * | * | * | 99.8818 | 99.8118 | 99.9519 | 18.1821 | 3048871 | 5748 | 3048919 | 1468 | 467 | 31.8120 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.9542 | 96.7192 | 97.1903 | 68.5416 | 737 | 25 | 761 | 22 | 7 | 31.8182 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.3339 | 98.0903 | 96.5891 | 65.8188 | 565 | 11 | 623 | 22 | 7 | 31.8182 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.7499 | 98.0301 | 97.4713 | 60.6157 | 846 | 17 | 848 | 22 | 7 | 31.8182 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | het | 97.5874 | 96.8539 | 98.3321 | 86.1464 | 1293 | 42 | 1297 | 22 | 7 | 31.8182 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | het | 97.6481 | 96.9087 | 98.3988 | 86.9392 | 1348 | 43 | 1352 | 22 | 7 | 31.8182 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6802 | 96.8254 | 96.5354 | 62.6690 | 610 | 20 | 613 | 22 | 7 | 31.8182 | |
| mlin-fermikit | INDEL | * | map_l125_m0_e0 | het | 57.2159 | 41.5673 | 91.7603 | 82.1524 | 244 | 343 | 245 | 22 | 7 | 31.8182 | |
| hfeng-pmm1 | SNP | * | map_l150_m0_e0 | homalt | 99.5848 | 99.7065 | 99.4633 | 76.6851 | 4077 | 12 | 4077 | 22 | 7 | 31.8182 | |
| hfeng-pmm3 | SNP | * | map_l150_m0_e0 | homalt | 99.5725 | 99.6821 | 99.4632 | 76.5815 | 4076 | 13 | 4076 | 22 | 7 | 31.8182 | |
| ckim-isaac | SNP | tv | map_l150_m2_e0 | * | 67.6247 | 51.1845 | 99.6230 | 78.7586 | 5812 | 5543 | 5813 | 22 | 7 | 31.8182 | |
| ckim-isaac | SNP | tv | map_l150_m2_e1 | * | 67.7075 | 51.2780 | 99.6284 | 78.7389 | 5898 | 5604 | 5899 | 22 | 7 | 31.8182 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.4202 | 96.3492 | 96.4912 | 68.0265 | 607 | 23 | 605 | 22 | 7 | 31.8182 | |