PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58651-58700 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | * | map_l125_m1_e0 | homalt | 95.5851 | 93.1694 | 98.1295 | 82.8225 | 682 | 50 | 682 | 13 | 4 | 30.7692 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 66.7446 | 61.4035 | 73.1034 | 97.1877 | 105 | 66 | 106 | 39 | 12 | 30.7692 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8358 | 99.8591 | 99.8124 | 64.8592 | 27639 | 39 | 27673 | 52 | 16 | 30.7692 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5758 | 99.3915 | 99.7609 | 70.9351 | 5390 | 33 | 5423 | 13 | 4 | 30.7692 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5758 | 99.3915 | 99.7609 | 70.9351 | 5390 | 33 | 5423 | 13 | 4 | 30.7692 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 31.5789 | 93.9490 | 0 | 0 | 6 | 13 | 4 | 30.7692 | |
| ciseli-custom | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 18.7500 | 98.4541 | 0 | 0 | 3 | 13 | 4 | 30.7692 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 82.6667 | 96.5181 | 0 | 0 | 62 | 13 | 4 | 30.7692 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 77.1930 | 96.7558 | 0 | 0 | 44 | 13 | 4 | 30.7692 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e1 | * | 99.5757 | 99.3634 | 99.7889 | 64.0077 | 49170 | 315 | 49163 | 104 | 32 | 30.7692 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.0967 | 99.3659 | 98.8288 | 86.9442 | 1097 | 7 | 1097 | 13 | 4 | 30.7692 | |
| jlack-gatk | SNP | tv | HG002complexvar | het | 99.8776 | 99.8932 | 99.8620 | 22.3009 | 150570 | 161 | 150494 | 208 | 64 | 30.7692 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | * | 97.4708 | 97.4708 | 97.4708 | 91.2896 | 501 | 13 | 501 | 13 | 4 | 30.7692 | |
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | het | 98.2879 | 98.3057 | 98.2700 | 78.1213 | 8123 | 140 | 8123 | 143 | 44 | 30.7692 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | * | 67.7419 | 75.0000 | 61.7647 | 95.8231 | 21 | 7 | 21 | 13 | 4 | 30.7692 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 75.9237 | 62.4049 | 96.9194 | 87.0711 | 410 | 247 | 409 | 13 | 4 | 30.7692 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | het | 84.4444 | 73.8627 | 98.5651 | 92.5841 | 893 | 316 | 893 | 13 | 4 | 30.7692 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 90.2256 | 0 | 0 | 0 | 13 | 4 | 30.7692 | ||
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5642 | 99.5193 | 99.6091 | 77.5046 | 6625 | 32 | 6625 | 26 | 8 | 30.7692 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 76.0576 | 66.0714 | 89.6000 | 69.0594 | 111 | 57 | 112 | 13 | 4 | 30.7692 | |
| qzeng-custom | INDEL | * | map_l125_m0_e0 | homalt | 80.6569 | 69.7183 | 95.6667 | 90.1704 | 198 | 86 | 287 | 13 | 4 | 30.7692 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.0405 | 98.5626 | 97.5238 | 64.3342 | 480 | 7 | 512 | 13 | 4 | 30.7692 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | * | 97.8058 | 97.3008 | 98.3161 | 87.6421 | 757 | 21 | 759 | 13 | 4 | 30.7692 | |
| jmaeng-gatk | SNP | * | HG002complexvar | het | 99.7155 | 99.4778 | 99.9544 | 19.1665 | 463066 | 2431 | 462938 | 211 | 65 | 30.8057 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 63.0411 | 72.4638 | 55.7870 | 87.7238 | 200 | 76 | 241 | 191 | 59 | 30.8901 | |
| gduggal-snapfb | SNP | * | segdup | homalt | 99.6002 | 99.7114 | 99.4891 | 90.4625 | 10712 | 31 | 10711 | 55 | 17 | 30.9091 | |
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | het | 76.0794 | 61.7119 | 99.1672 | 89.0304 | 13086 | 8119 | 13098 | 110 | 34 | 30.9091 | |
| gduggal-bwaplat | SNP | * | map_l150_m2_e0 | * | 69.3373 | 53.2274 | 99.4313 | 91.0275 | 16954 | 14898 | 16958 | 97 | 30 | 30.9278 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 77.8626 | 66.2338 | 94.4444 | 82.1887 | 1428 | 728 | 1428 | 84 | 26 | 30.9524 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.9159 | 94.4855 | 99.4747 | 56.3830 | 7933 | 463 | 7953 | 42 | 13 | 30.9524 | |
| jli-custom | SNP | * | map_l150_m0_e0 | het | 98.2666 | 97.4559 | 99.0908 | 76.5432 | 7738 | 202 | 7738 | 71 | 22 | 30.9859 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | het | 99.1571 | 98.8268 | 99.4897 | 52.9280 | 11456 | 136 | 11308 | 58 | 18 | 31.0345 | |
| ltrigg-rtg1 | SNP | tv | HG002complexvar | het | 99.7971 | 99.6716 | 99.9230 | 21.1569 | 150239 | 495 | 150457 | 116 | 36 | 31.0345 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 37.5839 | 24.1033 | 85.2792 | 74.6461 | 168 | 529 | 168 | 29 | 9 | 31.0345 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.5573 | 98.6641 | 94.5386 | 64.0244 | 517 | 7 | 502 | 29 | 9 | 31.0345 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6848 | 99.5401 | 99.8300 | 56.5387 | 17098 | 79 | 17030 | 29 | 9 | 31.0345 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 49.5193 | 78.0488 | 36.2637 | 92.4606 | 32 | 9 | 33 | 58 | 18 | 31.0345 | |
| ckim-isaac | INDEL | I1_5 | HG002complexvar | homalt | 94.8874 | 91.2478 | 98.8294 | 44.5077 | 12271 | 1177 | 12242 | 145 | 45 | 31.0345 | |
| ckim-isaac | SNP | tv | map_l125_m1_e0 | * | 70.3696 | 54.3831 | 99.6682 | 71.7978 | 8710 | 7306 | 8712 | 29 | 9 | 31.0345 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | het | 99.3984 | 98.9890 | 99.8111 | 65.4651 | 30647 | 313 | 30648 | 58 | 18 | 31.0345 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | * | 83.2803 | 71.6572 | 99.4040 | 79.8206 | 34346 | 13585 | 34357 | 206 | 64 | 31.0680 | |
| hfeng-pmm1 | SNP | ti | map_l100_m2_e0 | * | 99.5722 | 99.3566 | 99.7887 | 64.0145 | 48646 | 315 | 48639 | 103 | 32 | 31.0680 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.7167 | 98.4558 | 98.9789 | 74.5335 | 14346 | 225 | 14346 | 148 | 46 | 31.0811 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.7167 | 98.4558 | 98.9789 | 74.5335 | 14346 | 225 | 14346 | 148 | 46 | 31.0811 | |
| ltrigg-rtg1 | SNP | * | map_l125_m1_e0 | * | 99.1092 | 98.4292 | 99.7987 | 62.1857 | 44615 | 712 | 44616 | 90 | 28 | 31.1111 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5342 | 97.3339 | 99.7644 | 69.1366 | 19057 | 522 | 19057 | 45 | 14 | 31.1111 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5342 | 97.3339 | 99.7644 | 69.1366 | 19057 | 522 | 19057 | 45 | 14 | 31.1111 | |
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | het | 68.0749 | 51.8819 | 98.9622 | 92.4159 | 4287 | 3976 | 4291 | 45 | 14 | 31.1111 | |
| ckim-isaac | INDEL | * | HG002complexvar | homalt | 93.1685 | 88.5818 | 98.2561 | 47.1228 | 23941 | 3086 | 23890 | 424 | 132 | 31.1321 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.9692 | 75.8339 | 96.6071 | 82.4013 | 4729 | 1507 | 4755 | 167 | 52 | 31.1377 | |