PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58251-58300 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2966 | 98.6207 | 96.0076 | 71.3508 | 429 | 6 | 505 | 21 | 6 | 28.5714 | |
| qzeng-custom | INDEL | D1_5 | segdup | * | 98.3734 | 98.6401 | 98.1081 | 95.0976 | 1088 | 15 | 1089 | 21 | 6 | 28.5714 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | * | 98.3571 | 96.8735 | 99.8869 | 59.3116 | 12363 | 399 | 12363 | 14 | 4 | 28.5714 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m1_e0 | * | 98.9923 | 98.1217 | 99.8786 | 58.7041 | 28784 | 551 | 28785 | 35 | 10 | 28.5714 | |
| mlin-fermikit | INDEL | * | map_l150_m0_e0 | het | 52.0833 | 36.6569 | 89.9281 | 85.9312 | 125 | 216 | 125 | 14 | 4 | 28.5714 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 92.7767 | 92.1053 | 93.4579 | 87.1239 | 105 | 9 | 100 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 92.9049 | 92.2414 | 93.5780 | 88.1907 | 107 | 9 | 102 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 92.9336 | 92.2414 | 93.6364 | 88.3103 | 107 | 9 | 103 | 7 | 2 | 28.5714 | |
| ciseli-custom | INDEL | * | map_l250_m0_e0 | * | 55.0520 | 51.2821 | 59.4203 | 98.6428 | 40 | 38 | 41 | 28 | 8 | 28.5714 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 18.4466 | 95.4243 | 0 | 0 | 19 | 84 | 24 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 77.7778 | 93.3333 | 66.6667 | 95.8580 | 14 | 1 | 14 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 78.9474 | 93.7500 | 68.1818 | 96.2901 | 15 | 1 | 15 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 78.9474 | 93.7500 | 68.1818 | 96.3272 | 15 | 1 | 15 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | het | 82.6087 | 95.0000 | 73.0769 | 97.5495 | 19 | 1 | 19 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | homalt | 89.1892 | 97.0588 | 82.5000 | 94.7368 | 33 | 1 | 33 | 7 | 2 | 28.5714 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 18.4466 | 95.4243 | 0 | 0 | 19 | 84 | 24 | 28.5714 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 51.2821 | 45.4545 | 58.8235 | 97.9858 | 10 | 12 | 10 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | * | 72.7717 | 57.9767 | 97.7049 | 93.3158 | 298 | 216 | 298 | 7 | 2 | 28.5714 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5663 | 99.6000 | 99.5327 | 76.7518 | 2988 | 12 | 2982 | 14 | 4 | 28.5714 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7401 | 99.6720 | 99.8083 | 54.5545 | 3646 | 12 | 3645 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.8572 | 96.8468 | 98.8889 | 88.9182 | 645 | 21 | 623 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.8572 | 96.8468 | 98.8889 | 88.9182 | 645 | 21 | 623 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | * | 95.6449 | 95.8065 | 95.4839 | 89.2324 | 297 | 13 | 296 | 14 | 4 | 28.5714 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 56.2500 | 94.0520 | 0 | 0 | 9 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.2544 | 100.0000 | 96.5686 | 43.8017 | 197 | 0 | 197 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 60.8696 | 51.2195 | 75.0000 | 96.2617 | 21 | 20 | 21 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 55.5669 | 45.7143 | 70.8333 | 96.2848 | 16 | 19 | 17 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | SNP | tv | func_cds | * | 98.8510 | 98.5129 | 99.1913 | 36.1464 | 4306 | 65 | 4293 | 35 | 10 | 28.5714 | |
| ghariani-varprowl | INDEL | * | map_l150_m1_e0 | het | 89.9408 | 97.7778 | 83.2669 | 93.2001 | 836 | 19 | 836 | 168 | 48 | 28.5714 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m0_e0 | * | 93.8547 | 95.4545 | 92.3077 | 94.3089 | 168 | 8 | 168 | 14 | 4 | 28.5714 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e0 | * | 90.9871 | 93.8053 | 88.3333 | 97.2515 | 106 | 7 | 106 | 14 | 4 | 28.5714 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | * | 91.0638 | 93.8596 | 88.4298 | 97.3206 | 107 | 7 | 107 | 14 | 4 | 28.5714 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 36.1644 | 29.7297 | 46.1538 | 94.8310 | 11 | 26 | 12 | 14 | 4 | 28.5714 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 42.7574 | 27.8075 | 92.4731 | 71.5596 | 104 | 270 | 86 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 24.4898 | 16.6667 | 46.1538 | 69.0476 | 6 | 30 | 6 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.4174 | 87.2960 | 98.1771 | 57.2145 | 749 | 109 | 754 | 14 | 4 | 28.5714 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 39.0244 | 69.5652 | 97.8976 | 16 | 25 | 16 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | SNP | tv | map_l100_m1_e0 | homalt | 95.2001 | 90.9101 | 99.9149 | 63.7649 | 8221 | 822 | 8222 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e0 | homalt | 95.2754 | 91.0462 | 99.9166 | 66.1343 | 8389 | 825 | 8390 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | homalt | 95.2868 | 91.0664 | 99.9174 | 66.1273 | 8471 | 831 | 8471 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 4.7064 | 2.4535 | 57.5758 | 90.4348 | 29 | 1153 | 19 | 14 | 4 | 28.5714 | |
| gduggal-snapfb | INDEL | I1_5 | func_cds | * | 96.9697 | 97.7778 | 96.1749 | 35.5634 | 176 | 4 | 176 | 7 | 2 | 28.5714 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | * | 93.2137 | 94.3182 | 92.1348 | 92.6899 | 166 | 10 | 164 | 14 | 4 | 28.5714 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 12.5000 | 92.7928 | 0 | 0 | 1 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 12.5000 | 92.0792 | 0 | 0 | 1 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 7.9208 | 4.4444 | 36.3636 | 95.3586 | 4 | 86 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 13.5593 | 8.3333 | 36.3636 | 95.1754 | 4 | 44 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e1 | * | 7.4074 | 4.1237 | 36.3636 | 95.4545 | 4 | 93 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e1 | het | 12.9032 | 7.8431 | 36.3636 | 95.2790 | 4 | 47 | 4 | 7 | 2 | 28.5714 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3726 | 99.0232 | 99.7245 | 73.4687 | 5069 | 50 | 5067 | 14 | 4 | 28.5714 | |