PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57951-58000 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D16_PLUS | * | homalt | 88.9191 | 81.0875 | 98.4252 | 54.0612 | 1372 | 320 | 1375 | 22 | 6 | 27.2727 | |
| astatham-gatk | SNP | tv | map_l125_m0_e0 | * | 93.2991 | 87.8751 | 99.4368 | 79.1316 | 5827 | 804 | 5826 | 33 | 9 | 27.2727 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 87.1508 | 86.6667 | 87.6404 | 95.9118 | 78 | 12 | 78 | 11 | 3 | 27.2727 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.5000 | 86.5979 | 88.4211 | 95.7342 | 84 | 13 | 84 | 11 | 3 | 27.2727 | |
| asubramanian-gatk | SNP | * | map_l100_m1_e0 | het | 63.0315 | 46.0636 | 99.7898 | 86.5707 | 20894 | 24465 | 20888 | 44 | 12 | 27.2727 | |
| asubramanian-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7149 | 98.1219 | 99.3151 | 65.8879 | 3187 | 61 | 3190 | 22 | 6 | 27.2727 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e1 | * | 60.6316 | 59.2593 | 62.0690 | 91.8310 | 16 | 11 | 18 | 11 | 3 | 27.2727 | |
| anovak-vg | SNP | ti | map_l125_m0_e0 | * | 79.1475 | 83.1766 | 75.4908 | 80.4095 | 10615 | 2147 | 10537 | 3421 | 933 | 27.2727 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8802 | 99.9362 | 99.8243 | 43.3188 | 6264 | 4 | 6250 | 11 | 3 | 27.2727 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 38.8889 | 96.7626 | 0 | 0 | 7 | 11 | 3 | 27.2727 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 15.3846 | 93.4343 | 0 | 0 | 2 | 11 | 3 | 27.2727 | |
| ckim-dragen | INDEL | I16_PLUS | * | het | 98.7584 | 98.3444 | 99.1760 | 75.9243 | 2673 | 45 | 2648 | 22 | 6 | 27.2727 | |
| anovak-vg | SNP | tv | map_l100_m0_e0 | * | 81.2819 | 86.2414 | 76.8618 | 75.7478 | 9559 | 1525 | 9547 | 2874 | 784 | 27.2791 | |
| ciseli-custom | SNP | tv | HG002compoundhet | homalt | 78.4375 | 94.1854 | 67.2014 | 50.7638 | 3191 | 197 | 3184 | 1554 | 424 | 27.2844 | |
| anovak-vg | SNP | * | map_l125_m0_e0 | het | 76.4858 | 87.7448 | 67.7876 | 82.7028 | 11112 | 1552 | 11006 | 5230 | 1427 | 27.2849 | |
| cchapple-custom | SNP | ti | map_l100_m0_e0 | het | 96.2084 | 96.8676 | 95.5581 | 74.9532 | 13545 | 438 | 13553 | 630 | 172 | 27.3016 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | * | 87.0777 | 95.0174 | 80.3625 | 87.2790 | 820 | 43 | 1064 | 260 | 71 | 27.3077 | |
| ciseli-custom | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 30.2740 | 87.3110 | 0 | 0 | 221 | 509 | 139 | 27.3084 | |
| gduggal-snapplat | INDEL | * | HG002compoundhet | het | 24.1644 | 34.9047 | 18.4785 | 71.1703 | 1429 | 2665 | 1727 | 7619 | 2083 | 27.3395 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.7151 | 96.2963 | 91.2688 | 89.1952 | 1248 | 48 | 1338 | 128 | 35 | 27.3438 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | het | 96.4352 | 97.1970 | 95.6851 | 78.2763 | 18552 | 535 | 18561 | 837 | 229 | 27.3596 | |
| gduggal-snapvard | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 25.1969 | 72.4113 | 0 | 0 | 96 | 285 | 78 | 27.3684 | |
| gduggal-snapfb | SNP | tv | map_siren | het | 97.7974 | 98.9374 | 96.6834 | 63.5849 | 28305 | 304 | 28306 | 971 | 266 | 27.3944 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 73.1048 | 71.1289 | 75.1936 | 73.0650 | 2577 | 1046 | 2622 | 865 | 237 | 27.3988 | |
| hfeng-pmm1 | SNP | * | map_l150_m2_e1 | * | 99.3543 | 99.1307 | 99.5789 | 75.1677 | 31930 | 280 | 31924 | 135 | 37 | 27.4074 | |
| cchapple-custom | SNP | ti | map_l100_m0_e0 | * | 96.8619 | 96.6377 | 97.0872 | 70.6515 | 21039 | 732 | 21032 | 631 | 173 | 27.4168 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 50.0000 | 96.3237 | 0 | 0 | 62 | 62 | 17 | 27.4194 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.3237 | 0 | 0 | 62 | 62 | 17 | 27.4194 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 16.7513 | 92.3465 | 0 | 0 | 33 | 164 | 45 | 27.4390 | |
| qzeng-custom | SNP | * | HG002complexvar | het | 99.0563 | 98.3261 | 99.7975 | 19.7489 | 457708 | 7792 | 449025 | 911 | 250 | 27.4424 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | * | 82.9577 | 71.1789 | 99.4078 | 82.2985 | 53197 | 21540 | 53209 | 317 | 87 | 27.4448 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | * | 97.1333 | 97.0166 | 97.2504 | 74.6114 | 29657 | 912 | 29639 | 838 | 230 | 27.4463 | |
| cchapple-custom | SNP | ti | map_l250_m2_e1 | * | 96.4747 | 96.0008 | 96.9534 | 90.2115 | 4873 | 203 | 4869 | 153 | 42 | 27.4510 | |
| gduggal-snapplat | SNP | tv | map_l250_m0_e0 | * | 81.2227 | 72.9412 | 91.6256 | 96.8509 | 558 | 207 | 558 | 51 | 14 | 27.4510 | |
| gduggal-snapplat | SNP | tv | map_l250_m0_e0 | het | 79.8457 | 72.3776 | 89.0323 | 97.1314 | 414 | 158 | 414 | 51 | 14 | 27.4510 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | het | 97.5492 | 97.0640 | 98.0394 | 72.8908 | 30051 | 909 | 30053 | 601 | 165 | 27.4542 | |
| ltrigg-rtg2 | INDEL | I1_5 | * | het | 99.5106 | 99.4497 | 99.5716 | 56.0879 | 78606 | 435 | 77868 | 335 | 92 | 27.4627 | |
| hfeng-pmm1 | SNP | ti | map_l125_m2_e1 | * | 99.4622 | 99.2247 | 99.7008 | 70.5014 | 30332 | 237 | 30328 | 91 | 25 | 27.4725 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | * | 82.8217 | 70.9791 | 99.4075 | 82.3292 | 52499 | 21465 | 52511 | 313 | 86 | 27.4760 | |
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | * | 82.4562 | 70.4418 | 99.4115 | 81.1732 | 51002 | 21401 | 51014 | 302 | 83 | 27.4834 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e1 | * | 75.3654 | 60.6881 | 99.4067 | 87.7186 | 28646 | 18556 | 28653 | 171 | 47 | 27.4854 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 76.5373 | 63.7864 | 95.6597 | 61.8480 | 4407 | 2502 | 4408 | 200 | 55 | 27.5000 | |
| hfeng-pmm1 | SNP | ti | map_l100_m0_e0 | * | 99.4038 | 99.1778 | 99.6308 | 67.2084 | 21592 | 179 | 21589 | 80 | 22 | 27.5000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 15.7895 | 95.5649 | 0 | 0 | 15 | 80 | 22 | 27.5000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m1_e0 | * | 93.8776 | 95.4545 | 92.3518 | 91.7142 | 483 | 23 | 483 | 40 | 11 | 27.5000 | |
| astatham-gatk | SNP | tv | map_siren | het | 88.3820 | 79.2932 | 99.8239 | 66.9200 | 22685 | 5924 | 22680 | 40 | 11 | 27.5000 | |
| anovak-vg | SNP | ti | map_l150_m0_e0 | * | 77.7546 | 81.7199 | 74.1564 | 85.3644 | 6424 | 1437 | 6373 | 2221 | 611 | 27.5101 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | homalt | 82.7833 | 96.8858 | 72.2646 | 69.0795 | 280 | 9 | 284 | 109 | 30 | 27.5229 | |
| cchapple-custom | SNP | ti | map_l125_m2_e0 | het | 96.4167 | 97.1816 | 95.6637 | 78.2290 | 18344 | 532 | 18355 | 832 | 229 | 27.5240 | |
| jpowers-varprowl | SNP | tv | map_l125_m1_e0 | * | 97.1666 | 96.9968 | 97.3371 | 76.5818 | 15535 | 481 | 15535 | 425 | 117 | 27.5294 | |