PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57851-57900 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.7942 | 99.1385 | 98.4523 | 64.5861 | 4258 | 37 | 4262 | 67 | 18 | 26.8657 | |
| anovak-vg | SNP | tv | map_l100_m0_e0 | het | 78.7491 | 90.6120 | 69.6328 | 77.9564 | 6544 | 678 | 6542 | 2853 | 767 | 26.8840 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | * | 91.5832 | 95.0364 | 88.3721 | 90.1236 | 2087 | 109 | 2090 | 275 | 74 | 26.9091 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 13.8244 | 10.6122 | 19.8251 | 85.5882 | 52 | 438 | 68 | 275 | 74 | 26.9091 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 41.1765 | 88.7014 | 0 | 0 | 91 | 130 | 35 | 26.9231 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | * | 95.1860 | 95.5645 | 94.8104 | 87.9856 | 474 | 22 | 475 | 26 | 7 | 26.9231 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | * | 95.2705 | 95.6522 | 94.8919 | 90.2115 | 484 | 22 | 483 | 26 | 7 | 26.9231 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | * | 95.3887 | 95.7611 | 95.0192 | 91.2077 | 497 | 22 | 496 | 26 | 7 | 26.9231 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | het | 63.7840 | 46.8782 | 99.7614 | 87.0574 | 21751 | 24648 | 21745 | 52 | 14 | 26.9231 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | het | 64.0057 | 47.1171 | 99.7652 | 87.0062 | 22097 | 24801 | 22091 | 52 | 14 | 26.9231 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | * | 98.7646 | 97.6758 | 99.8779 | 53.5389 | 21265 | 506 | 21269 | 26 | 7 | 26.9231 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 52.6316 | 93.7500 | 36.5854 | 94.4142 | 15 | 1 | 15 | 26 | 7 | 26.9231 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 82.0706 | 76.0870 | 89.0756 | 91.1787 | 210 | 66 | 212 | 26 | 7 | 26.9231 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 23.5294 | 96.8893 | 0 | 0 | 8 | 26 | 7 | 26.9231 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 23.5294 | 96.8893 | 0 | 0 | 8 | 26 | 7 | 26.9231 | |
| ciseli-custom | INDEL | D6_15 | HG002complexvar | het | 69.9812 | 65.9506 | 74.5366 | 56.4774 | 2057 | 1062 | 2131 | 728 | 196 | 26.9231 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.8445 | 97.7707 | 97.9183 | 79.2041 | 1228 | 28 | 1223 | 26 | 7 | 26.9231 | |
| jpowers-varprowl | SNP | tv | map_l125_m2_e0 | * | 97.1791 | 97.0465 | 97.3121 | 78.1370 | 16002 | 487 | 16002 | 442 | 119 | 26.9231 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e0 | * | 97.3361 | 95.4779 | 99.2680 | 80.2721 | 3526 | 167 | 3526 | 26 | 7 | 26.9231 | |
| ltrigg-rtg1 | INDEL | I6_15 | * | het | 98.5293 | 97.6179 | 99.4579 | 45.4535 | 9794 | 239 | 9540 | 52 | 14 | 26.9231 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.2617 | 65.5172 | 97.1616 | 84.3499 | 893 | 470 | 890 | 26 | 7 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_l150_m1_e0 | * | 99.3066 | 99.0927 | 99.5213 | 73.8197 | 10813 | 99 | 10811 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e0 | * | 99.3292 | 99.1193 | 99.5400 | 75.2398 | 11255 | 100 | 11253 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_l150_m2_e1 | * | 99.3334 | 99.1219 | 99.5459 | 75.2491 | 11401 | 101 | 11399 | 52 | 14 | 26.9231 | |
| hfeng-pmm1 | SNP | tv | map_siren | het | 99.6130 | 99.4093 | 99.8175 | 56.2607 | 28440 | 169 | 28435 | 52 | 14 | 26.9231 | |
| anovak-vg | SNP | ti | map_l150_m0_e0 | het | 74.8246 | 85.7367 | 66.3765 | 86.9328 | 4370 | 727 | 4347 | 2202 | 593 | 26.9301 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 76.3336 | 82.0225 | 71.3826 | 66.3055 | 146 | 32 | 222 | 89 | 24 | 26.9663 | |
| cchapple-custom | SNP | ti | map_l250_m2_e0 | * | 96.4779 | 96.0264 | 96.9336 | 90.1381 | 4809 | 199 | 4805 | 152 | 41 | 26.9737 | |
| cchapple-custom | SNP | ti | map_l250_m2_e1 | het | 95.5838 | 95.7563 | 95.4120 | 91.7154 | 3159 | 140 | 3161 | 152 | 41 | 26.9737 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8670 | 96.7220 | 99.0393 | 65.6223 | 15550 | 527 | 15670 | 152 | 41 | 26.9737 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.8670 | 96.7220 | 99.0393 | 65.6223 | 15550 | 527 | 15670 | 152 | 41 | 26.9737 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.7961 | 98.2976 | 95.3398 | 72.9184 | 9527 | 165 | 9554 | 467 | 126 | 26.9807 | |
| gduggal-snapplat | INDEL | D1_5 | * | * | 84.8354 | 80.9636 | 89.0961 | 66.8161 | 118810 | 27935 | 139871 | 17118 | 4621 | 26.9950 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | * | 82.2615 | 77.8547 | 87.1972 | 95.7884 | 225 | 64 | 252 | 37 | 10 | 27.0270 | |
| astatham-gatk | INDEL | * | segdup | * | 98.7115 | 98.8654 | 98.5581 | 94.6872 | 2527 | 29 | 2529 | 37 | 10 | 27.0270 | |
| astatham-gatk | SNP | tv | map_l100_m1_e0 | het | 86.5303 | 76.4416 | 99.6869 | 75.5609 | 11785 | 3632 | 11781 | 37 | 10 | 27.0270 | |
| astatham-gatk | SNP | tv | map_l100_m2_e0 | het | 86.7029 | 76.7066 | 99.6951 | 76.6657 | 12102 | 3675 | 12098 | 37 | 10 | 27.0270 | |
| jpowers-varprowl | SNP | tv | map_l125_m2_e1 | * | 97.1894 | 97.0523 | 97.3269 | 78.1843 | 16166 | 491 | 16166 | 444 | 120 | 27.0270 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | * | 77.7410 | 73.0049 | 83.1343 | 80.5630 | 14152 | 5233 | 14132 | 2867 | 775 | 27.0317 | |
| qzeng-custom | SNP | ti | HG002complexvar | het | 99.0720 | 98.3388 | 99.8162 | 18.0479 | 309537 | 5229 | 307433 | 566 | 153 | 27.0318 | |
| gduggal-bwafb | SNP | tv | HG002compoundhet | * | 97.8192 | 99.1259 | 96.5465 | 53.1590 | 8845 | 78 | 8890 | 318 | 86 | 27.0440 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | het | 79.2823 | 66.0433 | 99.1598 | 88.7864 | 18751 | 9641 | 18765 | 159 | 43 | 27.0440 | |
| ciseli-custom | SNP | * | HG002compoundhet | homalt | 82.3846 | 93.4613 | 73.6552 | 42.1506 | 10077 | 705 | 10037 | 3590 | 971 | 27.0474 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 43.6441 | 89.1892 | 0 | 0 | 103 | 133 | 36 | 27.0677 | |
| anovak-vg | INDEL | * | map_l125_m2_e1 | het | 70.9268 | 68.8210 | 73.1655 | 89.5197 | 969 | 439 | 1017 | 373 | 101 | 27.0777 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | het | 98.5978 | 98.7179 | 98.4780 | 75.9201 | 18634 | 242 | 18634 | 288 | 78 | 27.0833 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | het | 98.6133 | 98.7321 | 98.4947 | 75.9784 | 18845 | 242 | 18845 | 288 | 78 | 27.0833 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | * | 83.1468 | 77.2177 | 90.0621 | 94.3416 | 383 | 113 | 435 | 48 | 13 | 27.0833 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | * | 84.1683 | 92.9204 | 76.9231 | 95.9931 | 105 | 8 | 160 | 48 | 13 | 27.0833 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | * | 84.2599 | 92.9825 | 77.0335 | 96.0759 | 106 | 8 | 161 | 48 | 13 | 27.0833 | |