PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57501-57550 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e0 | * | 94.8253 | 91.2387 | 98.7055 | 93.5812 | 302 | 29 | 305 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m2_e1 | * | 94.8576 | 91.2913 | 98.7138 | 93.7286 | 304 | 29 | 307 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 95.9350 | 98.3333 | 93.6508 | 88.2022 | 59 | 1 | 59 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.7526 | 86.4078 | 97.8022 | 85.8034 | 178 | 28 | 178 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.4615 | 92.0000 | 85.1852 | 91.0299 | 23 | 2 | 23 | 4 | 1 | 25.0000 | |
| jli-custom | SNP | tv | map_l125_m1_e0 | het | 98.9659 | 98.7656 | 99.1670 | 68.7560 | 10001 | 125 | 10000 | 84 | 21 | 25.0000 | |
| jli-custom | SNP | tv | map_l125_m2_e0 | het | 98.9924 | 98.7933 | 99.1922 | 70.6143 | 10316 | 126 | 10315 | 84 | 21 | 25.0000 | |
| jli-custom | SNP | tv | map_l125_m2_e1 | het | 99.0030 | 98.8060 | 99.2008 | 70.7055 | 10427 | 126 | 10426 | 84 | 21 | 25.0000 | |
| jli-custom | SNP | tv | map_l250_m0_e0 | het | 96.2433 | 94.0559 | 98.5348 | 89.4472 | 538 | 34 | 538 | 8 | 2 | 25.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m1_e0 | homalt | 96.0236 | 93.4097 | 98.7879 | 81.0454 | 326 | 23 | 326 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e0 | homalt | 96.1918 | 93.6813 | 98.8406 | 82.0686 | 341 | 23 | 341 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e1 | homalt | 96.1326 | 93.5484 | 98.8636 | 82.1138 | 348 | 24 | 348 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.9301 | 58.8235 | 86.2069 | 92.6952 | 30 | 21 | 25 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 93.4579 | 94.3396 | 92.5926 | 97.3607 | 100 | 6 | 100 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 93.8596 | 94.6903 | 93.0435 | 97.5835 | 107 | 6 | 107 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 93.9130 | 94.7368 | 93.1034 | 97.6346 | 108 | 6 | 108 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.3238 | 98.3607 | 98.2869 | 82.7101 | 480 | 8 | 459 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 90.3846 | 88.6792 | 92.1569 | 93.5361 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 86.6667 | 86.6667 | 86.6667 | 94.3609 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 90.3846 | 88.6792 | 92.1569 | 94.3080 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 86.6667 | 86.6667 | 86.6667 | 95.0166 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 90.3846 | 88.6792 | 92.1569 | 94.4565 | 47 | 6 | 47 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 86.6667 | 86.6667 | 86.6667 | 95.1378 | 26 | 4 | 26 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8574 | 99.7720 | 99.9429 | 62.6048 | 7003 | 16 | 6999 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e1 | homalt | 98.8303 | 98.1912 | 99.4778 | 81.6483 | 760 | 14 | 762 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | * | segdup | * | 98.9993 | 98.7872 | 99.2123 | 93.0351 | 2525 | 31 | 2519 | 20 | 5 | 25.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 84.0000 | 96.5612 | 0 | 0 | 21 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 73.3333 | 95.6647 | 0 | 0 | 11 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0959 | 99.3912 | 98.8024 | 75.4321 | 653 | 4 | 660 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e1 | * | 97.7413 | 95.9773 | 99.5713 | 78.2897 | 1861 | 78 | 1858 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e1 | * | 97.4484 | 95.6785 | 99.2851 | 80.9823 | 1107 | 50 | 1111 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2313 | 98.7627 | 99.7044 | 62.6862 | 1357 | 17 | 1349 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.9777 | 99.1254 | 98.8304 | 84.3764 | 340 | 3 | 338 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.7867 | 78.5714 | 89.7436 | 95.4064 | 33 | 9 | 35 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 81.0526 | 77.7778 | 84.6154 | 96.1310 | 21 | 6 | 22 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m0_e0 | het | 97.4302 | 95.2129 | 99.7533 | 66.6849 | 4853 | 244 | 4853 | 12 | 3 | 25.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e1 | het | 96.8015 | 94.0285 | 99.7430 | 81.3425 | 3102 | 197 | 3105 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7967 | 99.6732 | 99.9204 | 57.8106 | 10064 | 33 | 10047 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6813 | 99.7101 | 99.6525 | 34.1910 | 3440 | 10 | 3441 | 12 | 3 | 25.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9695 | 96.0199 | 97.9381 | 88.9898 | 193 | 8 | 190 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3925 | 99.2718 | 99.5134 | 71.4682 | 818 | 6 | 818 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8282 | 99.7547 | 99.9018 | 44.3519 | 4067 | 10 | 4070 | 4 | 1 | 25.0000 | |
| ciseli-custom | SNP | * | map_siren | * | 89.7321 | 87.9989 | 91.5349 | 59.0239 | 128679 | 17549 | 128115 | 11848 | 2967 | 25.0422 | |
| jpowers-varprowl | SNP | * | map_siren | * | 98.5825 | 98.3751 | 98.7907 | 60.8110 | 143852 | 2376 | 143855 | 1761 | 441 | 25.0426 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 77.6657 | 65.6975 | 94.9658 | 82.9333 | 9038 | 4719 | 9036 | 479 | 120 | 25.0522 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 77.6657 | 65.6975 | 94.9658 | 82.9333 | 9038 | 4719 | 9036 | 479 | 120 | 25.0522 | |
| anovak-vg | INDEL | I1_5 | map_siren | het | 46.4738 | 35.8715 | 65.9729 | 86.5236 | 603 | 1078 | 634 | 327 | 82 | 25.0765 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 81.6793 | 71.3911 | 95.4321 | 75.7937 | 5994 | 2402 | 5996 | 287 | 72 | 25.0871 | |
| jli-custom | SNP | ti | map_siren | * | 99.6599 | 99.5825 | 99.7375 | 51.1882 | 99936 | 419 | 99929 | 263 | 66 | 25.0951 | |
| jpowers-varprowl | SNP | tv | map_l125_m0_e0 | het | 94.8319 | 95.4783 | 94.1941 | 83.6101 | 4202 | 199 | 4202 | 259 | 65 | 25.0965 | |