PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57351-57400 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3823 | 95.3945 | 99.4547 | 79.4362 | 6566 | 317 | 6566 | 36 | 9 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | het | 97.2591 | 96.5928 | 97.9346 | 88.6168 | 567 | 20 | 569 | 12 | 3 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | het | 92.4528 | 92.4528 | 92.4528 | 97.6318 | 49 | 4 | 49 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | map_siren | hetalt | 93.4218 | 89.0688 | 98.2222 | 87.9936 | 220 | 27 | 221 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.3675 | 98.4593 | 98.2759 | 68.0074 | 1342 | 21 | 1368 | 24 | 6 | 25.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3771 | 99.1429 | 99.6124 | 57.9633 | 1041 | 9 | 1028 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.5100 | 61.9048 | 87.5000 | 94.9126 | 26 | 16 | 28 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.0851 | 59.2593 | 80.0000 | 96.0239 | 16 | 11 | 16 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.0241 | 77.2727 | 82.9787 | 93.9040 | 51 | 15 | 39 | 8 | 2 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | het | 95.8290 | 92.1159 | 99.8541 | 75.2192 | 2734 | 234 | 2737 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e0 | het | 96.1263 | 92.6552 | 99.8676 | 76.8996 | 3015 | 239 | 3018 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e1 | het | 96.1485 | 92.6948 | 99.8695 | 77.1012 | 3058 | 241 | 3061 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8687 | 99.8426 | 99.8949 | 39.6597 | 11415 | 18 | 11408 | 12 | 3 | 25.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8665 | 99.8517 | 99.8813 | 39.6598 | 6734 | 10 | 6732 | 8 | 2 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | func_cds | * | 99.9199 | 99.9314 | 99.9085 | 29.6249 | 4368 | 3 | 4367 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | func_cds | het | 99.8871 | 99.9247 | 99.8495 | 30.5098 | 2655 | 2 | 2654 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.7381 | 99.7754 | 99.7008 | 54.7087 | 1333 | 3 | 1333 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.6495 | 99.7661 | 99.5333 | 55.1309 | 853 | 2 | 853 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8719 | 99.8294 | 99.9145 | 39.6596 | 4681 | 8 | 4676 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.0000 | 75.0000 | 75.0000 | 97.8349 | 12 | 4 | 12 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 60.0000 | 60.0000 | 98.1982 | 6 | 4 | 6 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | homalt | 97.5460 | 95.7831 | 99.3750 | 80.3319 | 1272 | 56 | 1272 | 8 | 2 | 25.0000 | |
| ghariani-varprowl | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 59.4595 | 71 | 1 | 71 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5544 | 99.2984 | 99.8118 | 74.6933 | 2123 | 15 | 2121 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.7890 | 70.2703 | 63.6364 | 84.0116 | 52 | 22 | 35 | 20 | 5 | 25.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 54.0864 | 41.3442 | 78.1818 | 30.8176 | 203 | 288 | 86 | 24 | 6 | 25.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 71.6418 | 88.8889 | 60.0000 | 93.5484 | 8 | 1 | 6 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.7831 | 52 | 8 | 52 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | * | 95.1081 | 96.7894 | 93.4842 | 94.5833 | 1025 | 34 | 1033 | 72 | 18 | 25.0000 | |
| gduggal-snapfb | SNP | * | segdup | hetalt | 77.7778 | 100.0000 | 63.6364 | 96.7930 | 7 | 0 | 7 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | hetalt | 97.8831 | 99.8273 | 96.0133 | 26.9417 | 578 | 1 | 578 | 24 | 6 | 25.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 20.0000 | 90.7407 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 20.0000 | 89.7959 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 20.0000 | 77.2727 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | C1_5 | tech_badpromoters | het | 0.0000 | 0.0000 | 77.7778 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m1_e0 | * | 22.8571 | 14.8148 | 50.0000 | 93.6508 | 4 | 23 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m1_e0 | het | 28.5714 | 20.0000 | 50.0000 | 93.3884 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e0 | * | 22.8571 | 14.8148 | 50.0000 | 94.2446 | 4 | 23 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e0 | het | 28.5714 | 20.0000 | 50.0000 | 93.9394 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | * | 22.2222 | 14.2857 | 50.0000 | 94.2857 | 4 | 24 | 4 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m2_e1 | het | 28.5714 | 20.0000 | 50.0000 | 93.9850 | 4 | 16 | 4 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | * | 81.4815 | 91.6667 | 73.3333 | 98.8479 | 11 | 1 | 11 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | het | 81.8182 | 100.0000 | 69.2308 | 98.4185 | 9 | 0 | 9 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | * | 84.8485 | 93.3333 | 77.7778 | 98.6686 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.9429 | 14 | 0 | 14 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | * | 86.4865 | 94.1176 | 80.0000 | 98.5653 | 16 | 1 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | het | 88.8889 | 100.0000 | 80.0000 | 97.8094 | 16 | 0 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 84.2105 | 88.8889 | 80.0000 | 98.5735 | 16 | 2 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | het | 88.8889 | 100.0000 | 80.0000 | 97.8237 | 16 | 0 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m0_e0 | homalt | 95.8904 | 94.5946 | 97.2222 | 84.3137 | 140 | 8 | 140 | 4 | 1 | 25.0000 | |