PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57251-57300 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | * | func_cds | * | 99.4421 | 99.7753 | 99.1111 | 54.2683 | 444 | 1 | 446 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | * | 91.8033 | 96.5517 | 87.5000 | 96.9711 | 56 | 2 | 56 | 8 | 2 | 25.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7790 | 99.6566 | 99.9017 | 44.3228 | 4063 | 14 | 4066 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | het | 97.1036 | 96.9336 | 97.2743 | 89.2313 | 569 | 18 | 571 | 16 | 4 | 25.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | het | 95.5145 | 95.2632 | 95.7672 | 95.8815 | 181 | 9 | 181 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | het | 95.9427 | 95.7143 | 96.1722 | 95.9846 | 201 | 9 | 201 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | het | 95.9620 | 95.7346 | 96.1905 | 96.0667 | 202 | 9 | 202 | 8 | 2 | 25.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1373 | 95.7265 | 96.5517 | 92.8129 | 112 | 5 | 112 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m1_e0 | het | 94.5736 | 95.3125 | 93.8462 | 94.4254 | 61 | 3 | 61 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0000 | 95.2381 | 96.7742 | 93.0726 | 120 | 6 | 120 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | het | 94.3662 | 94.3662 | 94.3662 | 94.5636 | 67 | 4 | 67 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e1 | * | 95.6522 | 94.5312 | 96.8000 | 93.1769 | 121 | 7 | 121 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e1 | het | 94.3662 | 94.3662 | 94.3662 | 94.6896 | 67 | 4 | 67 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m1_e0 | * | 97.7372 | 96.7140 | 98.7823 | 87.5119 | 1295 | 44 | 1298 | 16 | 4 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | * | 97.7479 | 96.7105 | 98.8077 | 88.3990 | 1323 | 45 | 1326 | 16 | 4 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e1 | * | 97.7178 | 96.6308 | 98.8296 | 88.4427 | 1348 | 47 | 1351 | 16 | 4 | 25.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3564 | 99.1213 | 99.5925 | 49.2504 | 2933 | 26 | 2933 | 12 | 3 | 25.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.7255 | 97.6911 | 97.7600 | 78.8994 | 1227 | 29 | 1222 | 28 | 7 | 25.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8597 | 99.9065 | 99.8129 | 76.6441 | 2136 | 2 | 2134 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m0_e0 | het | 96.2963 | 96.5347 | 96.0591 | 91.1354 | 195 | 7 | 195 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m0_e0 | het | 96.2238 | 98.3333 | 94.2029 | 88.3051 | 59 | 1 | 65 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m0_e0 | het | 97.6501 | 97.3958 | 97.9058 | 89.8727 | 187 | 5 | 187 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.0854 | 99.3884 | 98.7842 | 84.1140 | 325 | 2 | 325 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.9751 | 99.1202 | 98.8304 | 85.5635 | 338 | 3 | 338 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.9811 | 99.1254 | 98.8372 | 85.8553 | 340 | 3 | 340 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4925 | 98.9899 | 98.0000 | 87.7301 | 196 | 2 | 196 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.5149 | 99.0050 | 98.0296 | 89.2819 | 199 | 2 | 199 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5366 | 99.0196 | 98.0583 | 89.4467 | 202 | 2 | 202 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | * | 99.0333 | 98.8686 | 99.1987 | 80.5885 | 2971 | 34 | 2971 | 24 | 6 | 25.0000 | |
| dgrover-gatk | INDEL | * | map_l125_m0_e0 | * | 97.4564 | 97.6190 | 97.2943 | 90.7643 | 861 | 21 | 863 | 24 | 6 | 25.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5591 | 99.4186 | 97.7143 | 81.1422 | 171 | 1 | 171 | 4 | 1 | 25.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 86.8132 | 90.8046 | 83.1579 | 94.5371 | 79 | 8 | 79 | 16 | 4 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 95.9350 | 98.3333 | 93.6508 | 91.5323 | 59 | 1 | 59 | 4 | 1 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.2963 | 95.7364 | 96.8627 | 87.5245 | 247 | 11 | 247 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 96.1832 | 95.4545 | 96.9231 | 88.0624 | 252 | 12 | 252 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 96.1468 | 95.2727 | 97.0370 | 87.9086 | 262 | 13 | 262 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | het | 97.6859 | 98.2143 | 97.1631 | 87.7445 | 275 | 5 | 274 | 8 | 2 | 25.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5292 | 99.4658 | 99.5927 | 55.2671 | 3910 | 21 | 3912 | 16 | 4 | 25.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6133 | 99.5263 | 99.7004 | 48.1016 | 3992 | 19 | 3993 | 12 | 3 | 25.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8929 | 99.1813 | 98.6063 | 58.3656 | 848 | 7 | 849 | 12 | 3 | 25.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 78.6102 | 66.6667 | 95.7672 | 95.4210 | 2 | 1 | 362 | 16 | 4 | 25.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 63.6364 | 94.3590 | 0 | 0 | 14 | 8 | 2 | 25.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 87.5000 | 96.2175 | 0 | 0 | 28 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | * | 74.2489 | 59.8616 | 97.7401 | 92.7340 | 173 | 116 | 173 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | het | 77.7518 | 64.8515 | 97.0588 | 93.4772 | 131 | 71 | 132 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.0003 | 88.7701 | 97.6540 | 47.5385 | 332 | 42 | 333 | 8 | 2 | 25.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 93.1635 | 90.0348 | 96.5174 | 56.7974 | 777 | 86 | 776 | 28 | 7 | 25.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.4330 | 91.3758 | 95.5850 | 59.8048 | 445 | 42 | 433 | 20 | 5 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 70.6147 | 60.2230 | 85.3403 | 77.0433 | 162 | 107 | 163 | 28 | 7 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | het | 85.6476 | 75.5144 | 98.9218 | 88.5352 | 367 | 119 | 367 | 4 | 1 | 25.0000 | |