PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55801-55850 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.9157 | 94.5455 | 97.3262 | 70.7584 | 364 | 21 | 364 | 10 | 2 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5386 | 99.2998 | 99.7786 | 39.6095 | 2269 | 16 | 2253 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8071 | 96.3738 | 99.2837 | 81.2818 | 691 | 26 | 693 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8741 | 96.4613 | 99.3289 | 82.5609 | 736 | 27 | 740 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.8495 | 96.4010 | 99.3421 | 82.5287 | 750 | 28 | 755 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 86.4541 | 77.3273 | 98.0237 | 68.7461 | 515 | 151 | 496 | 10 | 2 | 20.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 86.4541 | 77.3273 | 98.0237 | 68.7461 | 515 | 151 | 496 | 10 | 2 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 94.6903 | 93.8596 | 95.5357 | 89.8274 | 107 | 7 | 107 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.4370 | 93.2203 | 91.6667 | 91.4408 | 55 | 4 | 55 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 94.7826 | 93.9655 | 95.6140 | 90.6404 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.6829 | 93.4426 | 91.9355 | 92.0308 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 94.7826 | 93.9655 | 95.6140 | 90.8581 | 109 | 7 | 109 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.6829 | 93.4426 | 91.9355 | 92.2111 | 57 | 4 | 57 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7660 | 99.6556 | 99.8767 | 49.4516 | 4051 | 14 | 4051 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.9827 | 98.8372 | 97.1429 | 80.2036 | 170 | 2 | 170 | 5 | 1 | 20.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.6676 | 96.8208 | 98.5294 | 69.4245 | 335 | 11 | 335 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m0_e0 | * | 96.1538 | 97.0874 | 95.2381 | 87.4702 | 100 | 3 | 100 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 96.8658 | 97.6190 | 96.1240 | 87.0221 | 123 | 3 | 124 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 96.5923 | 96.9466 | 96.2406 | 87.4882 | 127 | 4 | 128 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 96.6925 | 97.0370 | 96.3504 | 87.3733 | 131 | 4 | 132 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_siren | het | 97.8495 | 97.5000 | 98.2014 | 83.8184 | 273 | 7 | 273 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.4337 | 89.0390 | 98.2847 | 83.6374 | 593 | 73 | 573 | 10 | 2 | 20.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.4337 | 89.0390 | 98.2847 | 83.6374 | 593 | 73 | 573 | 10 | 2 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.8593 | 98.4779 | 99.2436 | 74.6743 | 647 | 10 | 656 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9876 | 98.4366 | 99.5448 | 47.2044 | 6611 | 105 | 6561 | 30 | 6 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | * | 94.5605 | 94.1748 | 94.9495 | 84.3106 | 97 | 6 | 94 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3191 | 99.1623 | 99.4764 | 77.1586 | 947 | 8 | 950 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.2702 | 99.4536 | 99.0876 | 76.1116 | 546 | 3 | 543 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m0_e0 | * | 96.0396 | 93.8710 | 98.3108 | 82.6495 | 291 | 19 | 291 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8646 | 94.8617 | 98.9540 | 85.0251 | 480 | 26 | 473 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e0 | * | 96.8435 | 94.7977 | 98.9796 | 86.8102 | 492 | 27 | 485 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e1 | * | 96.9175 | 94.9153 | 99.0060 | 86.8531 | 504 | 27 | 498 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.7291 | 96.2264 | 99.2795 | 65.1606 | 714 | 28 | 689 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | SNP | tv | HG002compoundhet | * | 98.9891 | 98.2741 | 99.7146 | 44.8855 | 8769 | 154 | 8736 | 25 | 5 | 20.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.4211 | 99.0527 | 99.7923 | 61.9326 | 4810 | 46 | 4804 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | SNP | tv | map_l150_m1_e0 | * | 66.7357 | 50.1924 | 99.5456 | 91.4813 | 5477 | 5435 | 5477 | 25 | 5 | 20.0000 | |
| gduggal-bwaplat | SNP | tv | map_l150_m1_e0 | het | 71.5733 | 55.9315 | 99.3606 | 92.7084 | 3885 | 3061 | 3885 | 25 | 5 | 20.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 23.0769 | 97.4708 | 0 | 0 | 3 | 10 | 2 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | * | 97.6843 | 96.6265 | 98.7654 | 85.1240 | 802 | 28 | 800 | 10 | 2 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e0 | * | 97.6373 | 96.4994 | 98.8024 | 86.4580 | 827 | 30 | 825 | 10 | 2 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1304 | 99.7085 | 98.5591 | 85.6966 | 342 | 1 | 342 | 5 | 1 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e1 | * | 96.7557 | 95.4802 | 98.0658 | 89.8148 | 507 | 24 | 507 | 10 | 2 | 20.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 76.0000 | 73.0769 | 79.1667 | 96.7480 | 19 | 7 | 19 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | het | 75.7831 | 61.6063 | 98.4351 | 95.0187 | 629 | 392 | 629 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | * | 75.7994 | 61.3194 | 99.2320 | 94.1880 | 1292 | 815 | 1292 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m1_e0 | het | 78.5553 | 65.1685 | 98.8636 | 94.8423 | 870 | 465 | 870 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e0 | * | 76.5529 | 62.2951 | 99.2743 | 94.4882 | 1368 | 828 | 1368 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e0 | het | 79.3282 | 66.2114 | 98.9259 | 95.1028 | 921 | 470 | 921 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | * | 76.7237 | 62.5169 | 99.2862 | 94.5201 | 1391 | 834 | 1391 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m2_e1 | het | 79.5754 | 66.5483 | 98.9440 | 95.1306 | 937 | 471 | 937 | 10 | 2 | 20.0000 | |