PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55501-55550 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6381 | 99.7391 | 99.5373 | 34.1584 | 3441 | 9 | 3442 | 16 | 3 | 18.7500 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.8505 | 98.2637 | 99.4444 | 73.4266 | 14318 | 253 | 14318 | 80 | 15 | 18.7500 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.8505 | 98.2637 | 99.4444 | 73.4266 | 14318 | 253 | 14318 | 80 | 15 | 18.7500 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 63.2360 | 58.1967 | 69.2308 | 97.7322 | 71 | 51 | 72 | 32 | 6 | 18.7500 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8829 | 98.3619 | 99.4094 | 51.8057 | 2642 | 44 | 2693 | 16 | 3 | 18.7500 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6165 | 96.0123 | 95.2239 | 86.1513 | 313 | 13 | 319 | 16 | 3 | 18.7500 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3913 | 99.3241 | 99.4585 | 49.1657 | 2939 | 20 | 2939 | 16 | 3 | 18.7500 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | * | 98.8489 | 98.0061 | 99.7063 | 58.4119 | 10863 | 221 | 10862 | 32 | 6 | 18.7500 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | het | 97.1210 | 94.9349 | 99.4100 | 64.2688 | 2699 | 144 | 2696 | 16 | 3 | 18.7500 | |
| gduggal-snapfb | INDEL | * | map_l250_m1_e0 | het | 89.8396 | 88.4211 | 91.3043 | 94.3696 | 168 | 22 | 168 | 16 | 3 | 18.7500 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | * | 97.6299 | 97.0238 | 98.2437 | 83.5797 | 1793 | 55 | 1790 | 32 | 6 | 18.7500 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | * | 97.6865 | 97.0757 | 98.3051 | 84.3163 | 1859 | 56 | 1856 | 32 | 6 | 18.7500 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 16.5989 | 10.9091 | 34.6939 | 47.3118 | 36 | 294 | 34 | 64 | 12 | 18.7500 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 37.5633 | 25.3589 | 72.4138 | 74.4493 | 53 | 156 | 42 | 16 | 3 | 18.7500 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | het | 93.3985 | 94.5545 | 92.2705 | 87.9230 | 191 | 11 | 191 | 16 | 3 | 18.7500 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | * | 87.7841 | 93.3535 | 82.8418 | 98.1723 | 309 | 22 | 309 | 64 | 12 | 18.7500 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e1 | * | 87.8531 | 93.3934 | 82.9333 | 98.2167 | 311 | 22 | 311 | 64 | 12 | 18.7500 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | * | 97.9085 | 97.9085 | 97.9085 | 92.7817 | 749 | 16 | 749 | 16 | 3 | 18.7500 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e1 | het | 96.9210 | 97.1703 | 96.6729 | 76.0613 | 15487 | 451 | 15487 | 533 | 100 | 18.7617 | |
| gduggal-bwafb | SNP | tv | HG002compoundhet | het | 96.4922 | 98.6946 | 94.3859 | 59.0165 | 4612 | 61 | 4657 | 277 | 52 | 18.7726 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | het | 97.3202 | 98.9398 | 95.7528 | 78.2919 | 28091 | 301 | 28091 | 1246 | 234 | 18.7801 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | * | 99.1869 | 99.3321 | 99.0422 | 77.0287 | 20375 | 137 | 20371 | 197 | 37 | 18.7817 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e1 | het | 85.1359 | 81.6246 | 88.9630 | 91.9002 | 1035 | 233 | 1201 | 149 | 28 | 18.7919 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e1 | * | 99.4445 | 99.4977 | 99.3914 | 69.7839 | 25156 | 127 | 25152 | 154 | 29 | 18.8312 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 81.0781 | 72.2222 | 92.4092 | 89.7647 | 585 | 225 | 840 | 69 | 13 | 18.8406 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 59.9965 | 83.1683 | 46.9231 | 93.4110 | 84 | 17 | 61 | 69 | 13 | 18.8406 | |
| jli-custom | SNP | tv | map_siren | het | 99.4790 | 99.4407 | 99.5172 | 56.5108 | 28449 | 160 | 28447 | 138 | 26 | 18.8406 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e0 | het | 96.9118 | 97.1668 | 96.6583 | 76.0137 | 15330 | 447 | 15330 | 530 | 100 | 18.8679 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5273 | 99.1969 | 97.8668 | 72.2743 | 4817 | 39 | 4863 | 106 | 20 | 18.8679 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e1 | het | 98.7046 | 99.0277 | 98.3837 | 71.3332 | 46442 | 456 | 46444 | 763 | 144 | 18.8729 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | * | 70.7049 | 66.8930 | 74.9776 | 92.1064 | 3350 | 1658 | 3350 | 1118 | 211 | 18.8730 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | * | 91.7326 | 95.8640 | 87.9427 | 88.9869 | 1043 | 45 | 1043 | 143 | 27 | 18.8811 | |
| ckim-isaac | SNP | tv | HG002complexvar | het | 95.8287 | 92.0463 | 99.9352 | 18.9218 | 138745 | 11989 | 138887 | 90 | 17 | 18.8889 | |
| gduggal-bwafb | SNP | * | map_l100_m2_e0 | het | 98.6971 | 99.0172 | 98.3791 | 71.2956 | 45943 | 456 | 45945 | 757 | 143 | 18.8904 | |
| qzeng-custom | INDEL | D16_PLUS | HG002complexvar | * | 86.2026 | 93.2441 | 80.1500 | 61.6049 | 1532 | 111 | 1603 | 397 | 75 | 18.8917 | |
| mlin-fermikit | SNP | ti | HG002compoundhet | het | 93.4304 | 88.3535 | 99.1262 | 38.1960 | 8398 | 1107 | 8395 | 74 | 14 | 18.9189 | |
| ckim-isaac | SNP | ti | map_l125_m1_e0 | * | 74.8103 | 59.8330 | 99.7896 | 70.2803 | 17552 | 11783 | 17552 | 37 | 7 | 18.9189 | |
| astatham-gatk | INDEL | * | map_l150_m2_e0 | * | 96.6049 | 95.8807 | 97.3400 | 91.1929 | 1350 | 58 | 1354 | 37 | 7 | 18.9189 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e1 | * | 91.8807 | 95.8513 | 88.2259 | 89.6373 | 1109 | 48 | 1109 | 148 | 28 | 18.9189 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 39.4270 | 89.8476 | 0 | 0 | 289 | 444 | 84 | 18.9189 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | * | 96.0476 | 95.9257 | 96.1698 | 84.5601 | 1860 | 79 | 1858 | 74 | 14 | 18.9189 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 67.8492 | 81.8182 | 57.9545 | 95.9781 | 54 | 12 | 51 | 37 | 7 | 18.9189 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 82.8275 | 71.3902 | 98.6286 | 59.1429 | 5320 | 2132 | 5322 | 74 | 14 | 18.9189 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.4234 | 99.3750 | 97.4898 | 76.6883 | 1431 | 9 | 1437 | 37 | 7 | 18.9189 | |
| jlack-gatk | SNP | tv | HG002compoundhet | het | 98.9462 | 99.4650 | 98.4329 | 56.5753 | 4648 | 25 | 4648 | 74 | 14 | 18.9189 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.3685 | 99.0609 | 93.8186 | 66.4004 | 3059 | 29 | 2565 | 169 | 32 | 18.9349 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | * | 99.1792 | 99.3202 | 99.0387 | 75.5864 | 19578 | 134 | 19574 | 190 | 36 | 18.9474 | |
| dgrover-gatk | SNP | tv | map_l125_m0_e0 | * | 98.7276 | 98.8840 | 98.5716 | 78.3574 | 6557 | 74 | 6556 | 95 | 18 | 18.9474 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e0 | * | 99.4410 | 99.4927 | 99.3893 | 69.7626 | 24906 | 127 | 24902 | 153 | 29 | 18.9542 | |
| dgrover-gatk | SNP | ti | map_siren | het | 99.5897 | 99.6105 | 99.5689 | 58.1271 | 62139 | 243 | 62130 | 269 | 51 | 18.9591 | |