PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
501-550 / 86044 show all | |||||||||||||||
rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 92.9134 | 86.7647 | 100.0000 | 72.5581 | 59 | 9 | 59 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 91.0853 | 23 | 1 | 23 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 83.1683 | 17 | 2 | 17 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.5610 | 95.2381 | 100.0000 | 39.3939 | 20 | 1 | 20 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4325 | 98.8713 | 100.0000 | 31.8818 | 438 | 5 | 438 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7642 | 99.5294 | 100.0000 | 48.4461 | 846 | 4 | 846 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.7056 | 6 | 0 | 6 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 98.5294 | 8 | 1 | 8 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.5920 | 74 | 0 | 74 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.1176 | 1 | 1 | 1 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6190 | 95.3488 | 100.0000 | 77.2222 | 41 | 2 | 41 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.6265 | 36 | 3 | 36 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.6522 | 1 | 1 | 1 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | func_cds | homalt | 90.9091 | 83.3333 | 100.0000 | 60.0000 | 10 | 2 | 10 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 2 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.9474 | 1 | 0 | 1 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9005 | 1 | 0 | 1 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 9 | 0 | 9 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 8 | 0 | 8 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 44.1176 | 19 | 0 | 19 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9898 | 1 | 0 | 1 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9937 | 1 | 0 | 1 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | segdup | homalt | 99.7207 | 99.4429 | 100.0000 | 94.4210 | 357 | 2 | 357 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.9645 | 50 | 2 | 50 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7448 | 3 | 0 | 3 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7179 | 3 | 0 | 3 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5075 | 3 | 0 | 3 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 98.1081 | 7 | 1 | 7 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 98.3333 | 6 | 1 | 6 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 98.1538 | 6 | 1 | 6 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.8304 | 2 | 0 | 2 | 0 | 0 | ||
rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 96.7742 | 14 | 1 | 14 | 0 | 0 |