PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54701-54750 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.6181 | 98.9919 | 96.2818 | 88.4650 | 491 | 5 | 492 | 19 | 3 | 15.7895 | |
| qzeng-custom | INDEL | * | map_l100_m2_e0 | het | 83.5804 | 79.9740 | 87.5274 | 89.7430 | 1845 | 462 | 2400 | 342 | 54 | 15.7895 | |
| qzeng-custom | INDEL | * | map_l100_m2_e1 | homalt | 85.5777 | 78.8447 | 93.5680 | 81.7812 | 1010 | 271 | 1382 | 95 | 15 | 15.7895 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3760 | 99.2368 | 99.5156 | 55.1976 | 3901 | 30 | 3903 | 19 | 3 | 15.7895 | |
| gduggal-snapplat | SNP | ti | * | * | 99.1814 | 98.9158 | 99.4485 | 24.4080 | 2062907 | 22611 | 2063333 | 11443 | 1808 | 15.8001 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 44.0360 | 38.0774 | 52.2053 | 83.4017 | 11606 | 18874 | 14180 | 12982 | 2052 | 15.8065 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 44.0360 | 38.0774 | 52.2053 | 83.4017 | 11606 | 18874 | 14180 | 12982 | 2052 | 15.8065 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 86.1668 | 94.2029 | 79.3939 | 87.5000 | 1040 | 64 | 1048 | 272 | 43 | 15.8088 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.5046 | 98.2128 | 94.8548 | 61.3261 | 10716 | 195 | 10711 | 581 | 92 | 15.8348 | |
| qzeng-custom | INDEL | * | map_l100_m1_e0 | het | 83.3456 | 79.6421 | 87.4105 | 89.3842 | 1780 | 455 | 2319 | 334 | 53 | 15.8683 | |
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3785 | 98.8765 | 99.8856 | 58.5898 | 55006 | 625 | 54996 | 63 | 10 | 15.8730 | |
| gduggal-snapvard | SNP | tv | * | * | 98.9298 | 98.8902 | 98.9694 | 27.3396 | 958936 | 10762 | 953959 | 9934 | 1577 | 15.8748 | |
| jpowers-varprowl | SNP | ti | * | * | 99.5767 | 99.5483 | 99.6052 | 21.1558 | 2076086 | 9421 | 2076295 | 8230 | 1307 | 15.8809 | |
| eyeh-varpipe | SNP | tv | HG002compoundhet | het | 92.5346 | 98.5876 | 87.1819 | 61.1401 | 4607 | 66 | 1884 | 277 | 44 | 15.8845 | |
| hfeng-pmm3 | SNP | * | map_l100_m2_e1 | * | 99.6666 | 99.5946 | 99.7387 | 65.1913 | 74434 | 303 | 74423 | 195 | 31 | 15.8974 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | * | 92.2045 | 93.3489 | 91.0878 | 95.0147 | 1993 | 142 | 1993 | 195 | 31 | 15.8974 | |
| dgrover-gatk | SNP | * | map_l250_m0_e0 | het | 97.2149 | 97.3440 | 97.0861 | 94.4551 | 1466 | 40 | 1466 | 44 | 7 | 15.9091 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | * | 83.0230 | 95.8478 | 73.2252 | 92.0420 | 277 | 12 | 361 | 132 | 21 | 15.9091 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | * | 98.2517 | 98.5762 | 97.9294 | 87.1694 | 2077 | 30 | 2081 | 44 | 7 | 15.9091 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 90.7450 | 84.0340 | 98.6211 | 62.7612 | 23748 | 4512 | 23816 | 333 | 53 | 15.9159 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 73.1615 | 86.6667 | 63.2979 | 89.1767 | 143 | 22 | 119 | 69 | 11 | 15.9420 | |
| gduggal-snapplat | INDEL | D1_5 | * | het | 85.0942 | 83.0201 | 87.2745 | 66.1285 | 72704 | 14870 | 86462 | 12607 | 2010 | 15.9435 | |
| bgallagher-sentieon | SNP | * | map_l100_m1_e0 | * | 99.4317 | 99.5636 | 99.3001 | 65.4224 | 72087 | 316 | 72076 | 508 | 81 | 15.9449 | |
| ghariani-varprowl | SNP | tv | map_l150_m1_e0 | het | 96.2185 | 98.9058 | 93.6733 | 82.5202 | 6870 | 76 | 6870 | 464 | 74 | 15.9483 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | * | 98.8936 | 99.1694 | 98.6194 | 70.5239 | 25073 | 210 | 25073 | 351 | 56 | 15.9544 | |
| eyeh-varpipe | SNP | tv | HG002complexvar | * | 99.7847 | 99.8883 | 99.6813 | 20.5762 | 245880 | 275 | 235205 | 752 | 120 | 15.9574 | |
| bgallagher-sentieon | SNP | ti | map_l150_m2_e0 | het | 98.8935 | 99.2392 | 98.5502 | 79.6724 | 12783 | 98 | 12779 | 188 | 30 | 15.9574 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | * | 98.8766 | 99.1511 | 98.6037 | 68.5198 | 24293 | 208 | 24293 | 344 | 55 | 15.9884 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 52.8485 | 46.3538 | 61.4597 | 79.2031 | 2657 | 3075 | 2762 | 1732 | 277 | 15.9931 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m0_e0 | het | 50.8475 | 78.9474 | 37.5000 | 94.1349 | 15 | 4 | 15 | 25 | 4 | 16.0000 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | * | 96.1418 | 97.0817 | 95.2199 | 92.6863 | 499 | 15 | 498 | 25 | 4 | 16.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | * | 82.7225 | 90.8046 | 75.9615 | 95.2140 | 79 | 8 | 79 | 25 | 4 | 16.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.3731 | 95.8437 | 0 | 0 | 17 | 50 | 8 | 16.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 57.0736 | 54.6875 | 59.6774 | 93.7183 | 35 | 29 | 37 | 25 | 4 | 16.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | het | 98.3588 | 97.1042 | 99.6461 | 64.9467 | 7042 | 210 | 7040 | 25 | 4 | 16.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | het | 98.3805 | 97.1421 | 99.6509 | 65.0308 | 7138 | 210 | 7136 | 25 | 4 | 16.0000 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | * | 99.5907 | 99.5093 | 99.6723 | 71.0190 | 30419 | 150 | 30415 | 100 | 16 | 16.0000 | |
| hfeng-pmm2 | SNP | tv | map_l250_m0_e0 | * | 97.4026 | 98.0392 | 96.7742 | 93.4737 | 750 | 15 | 750 | 25 | 4 | 16.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | * | 98.2838 | 96.7501 | 99.8669 | 59.4717 | 18755 | 630 | 18753 | 25 | 4 | 16.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.1518 | 91.8431 | 92.4625 | 82.8802 | 26370 | 2342 | 26055 | 2124 | 340 | 16.0075 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.1518 | 91.8431 | 92.4625 | 82.8802 | 26370 | 2342 | 26055 | 2124 | 340 | 16.0075 | |
| bgallagher-sentieon | SNP | ti | map_l150_m1_e0 | het | 98.8799 | 99.2158 | 98.5462 | 78.5485 | 12273 | 97 | 12269 | 181 | 29 | 16.0221 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.2695 | 91.8075 | 92.7362 | 81.6429 | 17975 | 1604 | 17848 | 1398 | 224 | 16.0229 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 92.2695 | 91.8075 | 92.7362 | 81.6429 | 17975 | 1604 | 17848 | 1398 | 224 | 16.0229 | |
| bgallagher-sentieon | SNP | tv | map_l150_m1_e0 | * | 98.9592 | 99.3402 | 98.5810 | 76.0604 | 10840 | 72 | 10838 | 156 | 25 | 16.0256 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 73.2002 | 89.9486 | 61.7099 | 71.3186 | 1226 | 137 | 1357 | 842 | 135 | 16.0333 | |
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | * | 92.0378 | 87.7579 | 96.7564 | 95.8853 | 3147 | 439 | 3162 | 106 | 17 | 16.0377 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 83.9467 | 95.9574 | 74.6082 | 62.8854 | 451 | 19 | 476 | 162 | 26 | 16.0494 | |
| gduggal-snapplat | SNP | tv | segdup | * | 98.7367 | 98.4294 | 99.0458 | 94.5607 | 8398 | 134 | 8408 | 81 | 13 | 16.0494 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | * | 96.6158 | 96.9035 | 96.3299 | 89.2603 | 2128 | 68 | 2126 | 81 | 13 | 16.0494 | |