PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54451-54500 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | ti | map_l100_m0_e0 | het | 98.9661 | 99.2777 | 98.6565 | 72.6282 | 13882 | 101 | 13879 | 189 | 28 | 14.8148 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 72.0662 | 84.6154 | 62.7586 | 92.3219 | 187 | 34 | 182 | 108 | 16 | 14.8148 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.1321 | 46.1872 | 82.1586 | 80.3718 | 745 | 868 | 746 | 162 | 24 | 14.8148 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1851 | 98.1667 | 98.2036 | 71.4828 | 2945 | 55 | 2952 | 54 | 8 | 14.8148 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6016 | 96.7192 | 96.4844 | 63.4807 | 737 | 25 | 741 | 27 | 4 | 14.8148 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | het | 98.3382 | 97.0922 | 99.6165 | 55.2134 | 7012 | 210 | 7013 | 27 | 4 | 14.8148 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | * | 82.4121 | 91.1111 | 75.2294 | 95.6746 | 82 | 8 | 82 | 27 | 4 | 14.8148 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | het | 97.8105 | 96.8680 | 98.7716 | 82.6711 | 2165 | 70 | 2171 | 27 | 4 | 14.8148 | |
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | * | 98.7121 | 98.4511 | 98.9746 | 87.8091 | 2606 | 41 | 2606 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3151 | 99.0809 | 97.5610 | 86.3283 | 1078 | 10 | 1080 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.3954 | 99.1251 | 97.6764 | 86.9350 | 1133 | 10 | 1135 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.4147 | 99.1357 | 97.7041 | 87.0012 | 1147 | 10 | 1149 | 27 | 4 | 14.8148 | |
| bgallagher-sentieon | SNP | * | map_l150_m1_e0 | het | 98.7760 | 99.2493 | 98.3073 | 78.6499 | 19171 | 145 | 19165 | 330 | 49 | 14.8485 | |
| hfeng-pmm2 | SNP | * | HG002complexvar | het | 99.8103 | 99.6430 | 99.9782 | 18.0375 | 463835 | 1662 | 463706 | 101 | 15 | 14.8515 | |
| jmaeng-gatk | INDEL | * | map_siren | * | 97.8625 | 98.4211 | 97.3103 | 85.3526 | 7293 | 117 | 7308 | 202 | 30 | 14.8515 | |
| gduggal-bwaplat | SNP | tv | * | * | 98.5599 | 97.4574 | 99.6876 | 31.4101 | 945035 | 24655 | 945254 | 2962 | 440 | 14.8548 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.5120 | 87.0957 | 98.6467 | 70.2422 | 5386 | 798 | 5394 | 74 | 11 | 14.8649 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 92.0208 | 86.8227 | 97.8809 | 74.0738 | 3413 | 518 | 3418 | 74 | 11 | 14.8649 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 88.7085 | 94.0415 | 83.9479 | 92.5405 | 363 | 23 | 387 | 74 | 11 | 14.8649 | |
| gduggal-snapfb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.4947 | 99.2475 | 93.8904 | 70.4163 | 20047 | 152 | 20055 | 1305 | 194 | 14.8659 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | * | 91.4210 | 96.1761 | 87.1140 | 87.8478 | 830 | 33 | 818 | 121 | 18 | 14.8760 | |
| gduggal-snapplat | SNP | ti | HG002complexvar | het | 97.6877 | 97.4934 | 97.8828 | 21.8010 | 306876 | 7890 | 307493 | 6651 | 990 | 14.8850 | |
| bgallagher-sentieon | SNP | tv | map_l125_m2_e0 | * | 99.1716 | 99.4784 | 98.8667 | 73.4826 | 16403 | 86 | 16401 | 188 | 28 | 14.8936 | |
| bgallagher-sentieon | SNP | tv | map_l125_m2_e1 | * | 99.1800 | 99.4837 | 98.8781 | 73.5318 | 16571 | 86 | 16569 | 188 | 28 | 14.8936 | |
| ltrigg-rtg2 | SNP | tv | segdup | * | 98.9872 | 99.6132 | 98.3690 | 88.4663 | 8499 | 33 | 8504 | 141 | 21 | 14.8936 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | het | 80.6812 | 75.2060 | 87.0161 | 93.7402 | 1004 | 331 | 1079 | 161 | 24 | 14.9068 | |
| hfeng-pmm3 | SNP | * | map_l150_m2_e1 | * | 99.4641 | 99.4070 | 99.5212 | 75.5898 | 32019 | 191 | 32013 | 154 | 23 | 14.9351 | |
| hfeng-pmm3 | SNP | ti | map_l100_m0_e0 | * | 99.5150 | 99.4304 | 99.5997 | 67.5390 | 21647 | 124 | 21644 | 87 | 13 | 14.9425 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 67.4784 | 54.4914 | 88.5928 | 95.0381 | 825 | 689 | 831 | 107 | 16 | 14.9533 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.4365 | 96.8847 | 97.9946 | 71.7201 | 6220 | 200 | 6206 | 127 | 19 | 14.9606 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.4365 | 96.8847 | 97.9946 | 71.7201 | 6220 | 200 | 6206 | 127 | 19 | 14.9606 | |
| hfeng-pmm1 | SNP | * | * | * | 99.9496 | 99.9227 | 99.9766 | 18.0950 | 3052257 | 2362 | 3052118 | 715 | 107 | 14.9650 | |
| cchapple-custom | SNP | tv | map_l100_m2_e1 | * | 97.2075 | 97.9156 | 96.5096 | 71.7543 | 24756 | 527 | 24747 | 895 | 134 | 14.9721 | |
| cchapple-custom | SNP | tv | map_l100_m2_e1 | het | 96.3138 | 98.0926 | 94.5983 | 75.6213 | 15634 | 304 | 15674 | 895 | 134 | 14.9721 | |
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | * | 99.1503 | 99.4630 | 98.8396 | 71.8727 | 15930 | 86 | 15928 | 187 | 28 | 14.9733 | |
| cchapple-custom | SNP | tv | map_l100_m2_e0 | * | 97.1975 | 97.9028 | 96.5023 | 71.7198 | 24508 | 525 | 24500 | 888 | 133 | 14.9775 | |
| cchapple-custom | SNP | tv | map_l100_m2_e0 | het | 96.2979 | 98.0731 | 94.5857 | 75.5847 | 15473 | 304 | 15513 | 888 | 133 | 14.9775 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4172 | 99.3015 | 99.5333 | 49.8126 | 4265 | 30 | 4265 | 20 | 3 | 15.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m1_e0 | het | 95.2424 | 94.6502 | 95.8420 | 88.2223 | 460 | 26 | 461 | 20 | 3 | 15.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.7054 | 98.3117 | 95.1508 | 57.0643 | 16887 | 290 | 16875 | 860 | 129 | 15.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 4.7619 | 75.0000 | 0 | 1 | 1 | 20 | 3 | 15.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 4.7619 | 75.0000 | 0 | 1 | 1 | 20 | 3 | 15.0000 | |
| eyeh-varpipe | SNP | * | HG002complexvar | het | 99.8105 | 99.8904 | 99.7307 | 18.2348 | 464990 | 510 | 429610 | 1160 | 174 | 15.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | het | 93.6777 | 93.9799 | 93.3775 | 88.3891 | 281 | 18 | 282 | 20 | 3 | 15.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | het | 93.8813 | 94.1748 | 93.5897 | 89.6242 | 291 | 18 | 292 | 20 | 3 | 15.0000 | |
| ckim-isaac | SNP | * | map_l100_m2_e1 | het | 81.8788 | 69.4358 | 99.7550 | 67.9468 | 32564 | 14334 | 32571 | 80 | 12 | 15.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_siren | * | 98.8981 | 98.4692 | 99.3307 | 78.4555 | 2959 | 46 | 2968 | 20 | 3 | 15.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e0 | het | 97.6459 | 98.3505 | 96.9512 | 90.3681 | 1908 | 32 | 1908 | 60 | 9 | 15.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m2_e1 | het | 97.6756 | 98.3715 | 96.9895 | 90.4284 | 1933 | 32 | 1933 | 60 | 9 | 15.0000 | |
| astatham-gatk | SNP | tv | map_l250_m1_e0 | het | 89.4463 | 81.8131 | 98.6505 | 91.5618 | 1462 | 325 | 1462 | 20 | 3 | 15.0000 | |