PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54351-54400 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | * | map_l150_m0_e0 | * | 96.3239 | 94.1634 | 98.5859 | 85.8854 | 484 | 30 | 488 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 95.6250 | 96.0851 | 0 | 0 | 153 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | * | 97.7664 | 96.4079 | 99.1637 | 75.6190 | 832 | 31 | 830 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.0973 | 96.9713 | 99.2497 | 77.4882 | 1857 | 58 | 1852 | 14 | 2 | 14.2857 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.4194 | 99.4286 | 88.0952 | 73.9938 | 522 | 3 | 518 | 70 | 10 | 14.2857 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7661 | 99.8597 | 99.6727 | 76.2860 | 2135 | 3 | 2132 | 7 | 1 | 14.2857 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | het | 79.3959 | 94.1176 | 68.6567 | 96.4037 | 48 | 3 | 46 | 21 | 3 | 14.2857 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m0_e0 | * | 96.1805 | 96.5726 | 95.7916 | 89.1262 | 479 | 17 | 478 | 21 | 3 | 14.2857 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | * | 96.2329 | 97.2318 | 95.2542 | 91.7736 | 281 | 8 | 281 | 14 | 2 | 14.2857 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m2_e0 | het | 95.2520 | 94.7686 | 95.7404 | 89.4183 | 471 | 26 | 472 | 21 | 3 | 14.2857 | |
| ckim-dragen | SNP | tv | map_l250_m0_e0 | * | 95.6975 | 95.9477 | 95.4486 | 93.6441 | 734 | 31 | 734 | 35 | 5 | 14.2857 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 38.4615 | 35.7143 | 41.6667 | 98.0645 | 5 | 9 | 5 | 7 | 1 | 14.2857 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8174 | 99.8052 | 99.8295 | 60.0496 | 16397 | 32 | 16396 | 28 | 4 | 14.2857 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2727 | 99.3932 | 99.1525 | 71.5271 | 819 | 5 | 819 | 7 | 1 | 14.2857 | |
| ckim-gatk | INDEL | D6_15 | map_siren | * | 97.2468 | 97.2495 | 97.2441 | 86.7501 | 495 | 14 | 494 | 14 | 2 | 14.2857 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 93.4271 | 93.3962 | 93.4579 | 92.5952 | 99 | 7 | 100 | 7 | 1 | 14.2857 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8769 | 99.9262 | 99.8277 | 45.6225 | 4062 | 3 | 4055 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 41.6667 | 96.1415 | 0 | 0 | 5 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 22.2222 | 96.8085 | 0 | 1 | 2 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 6.6667 | 96.4706 | 0 | 0 | 1 | 14 | 2 | 14.2857 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 6.6667 | 96.4871 | 0 | 0 | 1 | 14 | 2 | 14.2857 | |
| qzeng-custom | INDEL | D6_15 | map_siren | homalt | 85.4475 | 90.0000 | 81.3333 | 76.9231 | 117 | 13 | 122 | 28 | 4 | 14.2857 | |
| qzeng-custom | INDEL | I6_15 | func_cds | het | 77.4194 | 100.0000 | 63.1579 | 33.3333 | 24 | 0 | 24 | 14 | 2 | 14.2857 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 64.4258 | 55.5556 | 76.6667 | 93.2584 | 5 | 4 | 23 | 7 | 1 | 14.2857 | |
| qzeng-custom | SNP | * | tech_badpromoters | * | 96.8273 | 98.0892 | 95.5975 | 47.8689 | 154 | 3 | 152 | 7 | 1 | 14.2857 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | * | 97.2191 | 96.5620 | 97.8852 | 87.7089 | 1292 | 46 | 1296 | 28 | 4 | 14.2857 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | * | 97.3214 | 96.6619 | 97.9899 | 88.6072 | 1361 | 47 | 1365 | 28 | 4 | 14.2857 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2146 | 96.7797 | 99.6928 | 37.8817 | 4538 | 151 | 4543 | 14 | 2 | 14.2857 | |
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | * | 93.7500 | 96.1538 | 91.4634 | 99.7895 | 75 | 3 | 75 | 7 | 1 | 14.2857 | |
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | het | 91.8919 | 96.2264 | 87.9310 | 97.3827 | 51 | 2 | 51 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.3219 | 93.9577 | 94.6889 | 71.3603 | 622 | 40 | 624 | 35 | 5 | 14.2857 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.0445 | 97.1326 | 98.9736 | 79.7926 | 1355 | 40 | 1350 | 14 | 2 | 14.2857 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.3487 | 98.9909 | 99.7091 | 60.6090 | 4807 | 49 | 4798 | 14 | 2 | 14.2857 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3508 | 99.1580 | 99.5443 | 63.5414 | 3062 | 26 | 3058 | 14 | 2 | 14.2857 | |
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | het | 46.6926 | 31.5789 | 89.5522 | 92.7095 | 60 | 130 | 60 | 7 | 1 | 14.2857 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5284 | 97.1014 | 97.9592 | 87.5680 | 335 | 10 | 336 | 7 | 1 | 14.2857 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 61.1111 | 97.7070 | 0 | 0 | 11 | 7 | 1 | 14.2857 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 61.1111 | 97.7070 | 0 | 0 | 11 | 7 | 1 | 14.2857 | |
| cchapple-custom | SNP | tv | map_siren | het | 97.1514 | 98.6228 | 95.7232 | 66.6384 | 28215 | 394 | 28291 | 1264 | 181 | 14.3196 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 84.4828 | 94.9577 | 76.0894 | 85.5630 | 2580 | 137 | 2043 | 642 | 92 | 14.3302 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 89.5968 | 97.3744 | 82.9698 | 74.5108 | 4710 | 127 | 4755 | 976 | 140 | 14.3443 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0366 | 99.3834 | 98.6923 | 64.9734 | 55288 | 343 | 55243 | 732 | 105 | 14.3443 | |
| gduggal-bwaplat | SNP | * | * | * | 98.8646 | 98.0471 | 99.6958 | 26.6546 | 2994965 | 59654 | 2995523 | 9139 | 1314 | 14.3779 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e0 | * | 80.2426 | 73.1534 | 88.8532 | 94.8529 | 1030 | 378 | 1108 | 139 | 20 | 14.3885 | |
| qzeng-custom | SNP | ti | * | het | 99.4567 | 99.1981 | 99.7166 | 23.5601 | 1271618 | 10279 | 1269681 | 3608 | 520 | 14.4124 | |
| gduggal-bwafb | SNP | tv | map_siren | * | 99.0828 | 99.3686 | 98.7986 | 61.3728 | 45640 | 290 | 45640 | 555 | 80 | 14.4144 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.9598 | 98.5931 | 99.3293 | 80.6409 | 14366 | 205 | 14366 | 97 | 14 | 14.4330 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.9598 | 98.5931 | 99.3293 | 80.6409 | 14366 | 205 | 14366 | 97 | 14 | 14.4330 | |
| cchapple-custom | SNP | tv | map_siren | * | 97.8668 | 98.4651 | 97.2758 | 62.3550 | 45225 | 705 | 45206 | 1266 | 183 | 14.4550 | |
| gduggal-snapvard | SNP | tv | segdup | het | 97.6892 | 96.9926 | 98.3958 | 95.3896 | 5128 | 159 | 5091 | 83 | 12 | 14.4578 | |