PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54251-54300 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 63.1579 | 100.0000 | 46.1538 | 96.7581 | 9 | 0 | 6 | 7 | 1 | 14.2857 | |
| eyeh-varpipe | SNP | ti | HG002compoundhet | het | 95.2908 | 98.8427 | 91.9853 | 54.7039 | 9395 | 110 | 4017 | 350 | 50 | 14.2857 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 52.5424 | 95.8421 | 0 | 0 | 31 | 28 | 4 | 14.2857 | |
| gduggal-bwavard | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 45.0980 | 95.9363 | 0 | 0 | 23 | 28 | 4 | 14.2857 | |
| gduggal-bwavard | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 57.1429 | 94.8112 | 0 | 0 | 84 | 63 | 9 | 14.2857 | |
| gduggal-bwavard | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 46.6102 | 95.3025 | 0 | 0 | 55 | 63 | 9 | 14.2857 | |
| gduggal-bwavard | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 46.1538 | 97.4104 | 0 | 0 | 6 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 30.0000 | 97.7925 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | het | 78.9474 | 93.7500 | 68.1818 | 95.6607 | 15 | 1 | 15 | 7 | 1 | 14.2857 | |
| bgallagher-sentieon | SNP | * | map_l100_m0_e0 | het | 98.8545 | 99.3162 | 98.3971 | 73.2385 | 21060 | 145 | 21056 | 343 | 49 | 14.2857 | |
| bgallagher-sentieon | SNP | tv | map_l250_m1_e0 | het | 97.5542 | 98.2093 | 96.9078 | 89.8378 | 1755 | 32 | 1755 | 56 | 8 | 14.2857 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | het | 93.0816 | 95.6012 | 90.6915 | 92.2394 | 326 | 15 | 341 | 35 | 5 | 14.2857 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | * | 58.0625 | 40.9300 | 99.8635 | 87.2733 | 10246 | 14787 | 10244 | 14 | 2 | 14.2857 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | * | 58.2603 | 41.1264 | 99.8655 | 87.2297 | 10398 | 14885 | 10396 | 14 | 2 | 14.2857 | |
| asubramanian-gatk | SNP | tv | map_l125_m1_e0 | het | 48.5238 | 32.0561 | 99.7847 | 92.9805 | 3246 | 6880 | 3245 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e0 | * | 39.2587 | 24.4386 | 99.7483 | 94.9137 | 2775 | 8580 | 2774 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e0 | het | 42.5209 | 27.0270 | 99.6439 | 95.4728 | 1960 | 5292 | 1959 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e1 | * | 39.5063 | 24.6305 | 99.7534 | 94.8804 | 2833 | 8669 | 2832 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | tv | map_l150_m2_e1 | het | 42.7242 | 27.1911 | 99.6507 | 95.4527 | 1998 | 5350 | 1997 | 7 | 1 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | het | 97.9174 | 98.4270 | 97.4132 | 88.3493 | 1314 | 21 | 1318 | 35 | 5 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e0 | het | 97.9642 | 98.4184 | 97.5142 | 89.0844 | 1369 | 22 | 1373 | 35 | 5 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l125_m2_e1 | het | 97.9886 | 98.4375 | 97.5439 | 89.1635 | 1386 | 22 | 1390 | 35 | 5 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | het | 94.8454 | 96.8421 | 92.9293 | 96.3327 | 184 | 6 | 184 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | het | 95.3271 | 97.1429 | 93.5780 | 96.4748 | 204 | 6 | 204 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | het | 95.3488 | 97.1564 | 93.6073 | 96.5517 | 205 | 6 | 205 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2903 | 98.1771 | 96.4194 | 85.9201 | 377 | 7 | 377 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3337 | 99.5146 | 99.1536 | 70.9926 | 820 | 4 | 820 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | * | map_l250_m2_e0 | * | 31.9242 | 19.0108 | 99.5352 | 98.3542 | 1499 | 6386 | 1499 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | * | map_l250_m2_e0 | het | 33.8604 | 20.4082 | 99.3440 | 98.5469 | 1060 | 4134 | 1060 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | * | map_l250_m2_e1 | * | 32.0765 | 19.1186 | 99.5437 | 98.3572 | 1527 | 6460 | 1527 | 7 | 1 | 14.2857 | |
| asubramanian-gatk | SNP | * | map_l250_m2_e1 | het | 34.0104 | 20.5167 | 99.3560 | 98.5506 | 1080 | 4184 | 1080 | 7 | 1 | 14.2857 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 10.1868 | 6.3158 | 26.3158 | 62.7451 | 6 | 89 | 5 | 14 | 2 | 14.2857 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 10.8696 | 6.2500 | 41.6667 | 53.8462 | 1 | 15 | 5 | 7 | 1 | 14.2857 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.0036 | 97.5124 | 96.5000 | 88.7577 | 196 | 5 | 193 | 7 | 1 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8000 | 99.6479 | 99.9525 | 54.9426 | 14718 | 52 | 14720 | 7 | 1 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 96.0534 | 94.5409 | 97.6150 | 85.1242 | 1143 | 66 | 1146 | 28 | 4 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 96.0772 | 94.5064 | 97.7011 | 85.6419 | 1187 | 69 | 1190 | 28 | 4 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 95.9899 | 94.3218 | 97.7180 | 85.7871 | 1196 | 72 | 1199 | 28 | 4 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 95.4352 | 95.2282 | 95.6432 | 90.0310 | 459 | 23 | 461 | 21 | 3 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 95.4137 | 94.9416 | 95.8904 | 90.4629 | 488 | 26 | 490 | 21 | 3 | 14.2857 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 95.2826 | 94.6360 | 95.9381 | 90.5225 | 494 | 28 | 496 | 21 | 3 | 14.2857 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.7794 | 94.2322 | 99.4681 | 58.4858 | 1307 | 80 | 1309 | 7 | 1 | 14.2857 | |
| ckim-isaac | SNP | tv | map_l250_m2_e0 | * | 60.1307 | 43.0951 | 99.4396 | 91.3095 | 1242 | 1640 | 1242 | 7 | 1 | 14.2857 | |
| ckim-isaac | SNP | tv | map_l250_m2_e0 | het | 63.3205 | 46.4948 | 99.2299 | 92.2101 | 902 | 1038 | 902 | 7 | 1 | 14.2857 | |
| ckim-isaac | SNP | tv | map_l250_m2_e1 | * | 60.3106 | 43.2785 | 99.4484 | 91.3314 | 1262 | 1654 | 1262 | 7 | 1 | 14.2857 | |
| ckim-isaac | SNP | tv | map_l250_m2_e1 | het | 63.5294 | 46.7176 | 99.2432 | 92.2217 | 918 | 1047 | 918 | 7 | 1 | 14.2857 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | * | 96.8785 | 96.4404 | 97.3206 | 91.1117 | 2032 | 75 | 2034 | 56 | 8 | 14.2857 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | het | 90.9091 | 100.0000 | 83.3333 | 97.3897 | 37 | 0 | 35 | 7 | 1 | 14.2857 | |
| dgrover-gatk | INDEL | * | map_l125_m1_e0 | het | 97.9822 | 98.0524 | 97.9120 | 89.0949 | 1309 | 26 | 1313 | 28 | 4 | 14.2857 | |
| dgrover-gatk | INDEL | * | map_l125_m2_e0 | het | 98.0266 | 98.0590 | 97.9943 | 89.7744 | 1364 | 27 | 1368 | 28 | 4 | 14.2857 | |