PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54201-54250 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.6842 | 82.3529 | 66.6667 | 96.9741 | 14 | 3 | 14 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | het | 97.7908 | 96.8357 | 98.7649 | 83.7444 | 2234 | 73 | 2239 | 28 | 4 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | het | 97.8030 | 96.8417 | 98.7837 | 83.8513 | 2269 | 74 | 2274 | 28 | 4 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l150_m0_e0 | het | 96.5886 | 95.3079 | 97.9042 | 90.5060 | 325 | 16 | 327 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | het | 94.6524 | 93.1579 | 96.1957 | 95.0297 | 177 | 13 | 177 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | het | 95.1691 | 93.8095 | 96.5686 | 95.2536 | 197 | 13 | 197 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | het | 95.1923 | 93.8389 | 96.5854 | 95.3641 | 198 | 13 | 198 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 30.0000 | 96.9880 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 22.2222 | 96.9283 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 30.0000 | 97.2452 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 22.2222 | 97.1875 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 30.0000 | 97.3333 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 22.2222 | 97.2810 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | homalt | 95.2221 | 92.9624 | 97.5945 | 78.4125 | 568 | 43 | 568 | 14 | 2 | 14.2857 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | homalt | 95.2066 | 92.9032 | 97.6271 | 78.5766 | 576 | 44 | 576 | 14 | 2 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | * | 45.1325 | 31.6239 | 78.7879 | 95.2518 | 37 | 80 | 26 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | het | 47.3921 | 35.9375 | 69.5652 | 94.6882 | 23 | 41 | 16 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | * | 45.3591 | 31.7460 | 79.4118 | 95.4485 | 40 | 86 | 27 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | het | 47.0393 | 35.2113 | 70.8333 | 94.8052 | 25 | 46 | 17 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | * | 44.8505 | 31.2500 | 79.4118 | 95.5145 | 40 | 88 | 27 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | het | 47.0393 | 35.2113 | 70.8333 | 94.8608 | 25 | 46 | 17 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | * | 43.1110 | 29.0766 | 83.3333 | 91.7593 | 148 | 361 | 105 | 21 | 3 | 14.2857 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | homalt | 33.4855 | 23.4043 | 58.8235 | 93.4109 | 11 | 36 | 10 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 42.1053 | 50.0000 | 36.3636 | 98.1002 | 4 | 4 | 4 | 7 | 1 | 14.2857 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | het | 94.3674 | 95.8506 | 92.9293 | 85.6812 | 462 | 20 | 460 | 35 | 5 | 14.2857 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | het | 94.7138 | 96.1089 | 93.3586 | 86.7121 | 494 | 20 | 492 | 35 | 5 | 14.2857 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | het | 93.8879 | 94.3218 | 93.4579 | 89.6652 | 299 | 18 | 300 | 21 | 3 | 14.2857 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | het | 74.7095 | 69.0476 | 81.3830 | 98.2825 | 145 | 65 | 153 | 35 | 5 | 14.2857 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | het | 74.8369 | 69.1943 | 81.4815 | 98.3230 | 146 | 65 | 154 | 35 | 5 | 14.2857 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | het | 96.4347 | 94.4444 | 98.5106 | 85.0794 | 459 | 27 | 463 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e0 | het | 96.4087 | 94.3662 | 98.5417 | 86.5509 | 469 | 28 | 473 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | het | 96.4880 | 94.4882 | 98.5743 | 86.6285 | 480 | 28 | 484 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.0370 | 96.2351 | 76.1733 | 88.6760 | 1457 | 57 | 1477 | 462 | 66 | 14.2857 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.0740 | 97.6929 | 94.5078 | 73.4922 | 1355 | 32 | 1325 | 77 | 11 | 14.2857 | |
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 22.2222 | 80.0000 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 75.8730 | 62.2396 | 97.1545 | 85.6476 | 239 | 145 | 239 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 61.6145 | 48.5714 | 84.2342 | 85.1703 | 187 | 198 | 187 | 35 | 5 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | * | 75.1793 | 60.7184 | 98.6817 | 93.9453 | 524 | 339 | 524 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | * | 77.0354 | 63.0515 | 98.9899 | 94.0592 | 686 | 402 | 686 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | het | 79.1426 | 66.1157 | 98.5626 | 94.6081 | 480 | 246 | 480 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e0 | * | 77.9841 | 64.3045 | 99.0566 | 94.2525 | 735 | 408 | 735 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e0 | het | 80.2795 | 67.6702 | 98.6641 | 94.7495 | 517 | 247 | 517 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | * | 78.1152 | 64.4771 | 99.0704 | 94.2799 | 746 | 411 | 746 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | het | 80.4615 | 67.9221 | 98.6792 | 94.7881 | 523 | 247 | 523 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 85.1218 | 75.0000 | 98.4018 | 76.1827 | 432 | 144 | 431 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e0 | * | 97.3150 | 97.3788 | 97.2513 | 89.0482 | 743 | 20 | 743 | 21 | 3 | 14.2857 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m2_e1 | * | 97.3667 | 97.4293 | 97.3042 | 89.0328 | 758 | 20 | 758 | 21 | 3 | 14.2857 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 56.2500 | 93.5135 | 0 | 0 | 27 | 21 | 3 | 14.2857 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 47.5000 | 93.9940 | 0 | 0 | 19 | 21 | 3 | 14.2857 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4824 | 99.4939 | 99.4709 | 56.5517 | 1376 | 7 | 1316 | 7 | 1 | 14.2857 | |