PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52101-52150 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | ti | map_l150_m0_e0 | * | 89.0696 | 94.6444 | 84.1150 | 85.4263 | 7440 | 421 | 7371 | 1392 | 107 | 7.6868 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 36.5854 | 95.8959 | 0 | 0 | 30 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 27.7778 | 95.8501 | 0 | 0 | 20 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 37.3494 | 96.2730 | 0 | 0 | 31 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 28.7671 | 96.2526 | 0 | 0 | 21 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 37.3494 | 96.3339 | 0 | 0 | 31 | 52 | 4 | 7.6923 | |
| gduggal-snapvard | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 28.7671 | 96.3169 | 0 | 0 | 21 | 52 | 4 | 7.6923 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | het | 34.2146 | 28.2051 | 43.4783 | 84.7682 | 11 | 28 | 10 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | homalt | 88.8389 | 81.4189 | 97.7470 | 86.4139 | 482 | 110 | 564 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.1147 | 81.8331 | 97.8188 | 86.9556 | 500 | 111 | 583 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e1 | homalt | 88.9945 | 81.6129 | 97.8441 | 87.0712 | 506 | 114 | 590 | 13 | 1 | 7.6923 | |
| hfeng-pmm1 | INDEL | * | map_l150_m1_e0 | het | 96.9158 | 95.4386 | 98.4394 | 87.9118 | 816 | 39 | 820 | 13 | 1 | 7.6923 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 95.2376 | 97.3829 | 93.1848 | 85.5574 | 707 | 19 | 711 | 52 | 4 | 7.6923 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | * | 94.8142 | 97.0760 | 92.6554 | 94.4234 | 166 | 5 | 164 | 13 | 1 | 7.6923 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 93.1984 | 97.2973 | 89.4309 | 94.7682 | 108 | 3 | 110 | 13 | 1 | 7.6923 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | het | 95.6311 | 97.5248 | 93.8095 | 92.1023 | 197 | 5 | 197 | 13 | 1 | 7.6923 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | het | 96.3484 | 97.6654 | 95.0664 | 90.7186 | 502 | 12 | 501 | 26 | 2 | 7.6923 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6905 | 99.8338 | 99.5476 | 42.3216 | 11414 | 19 | 11441 | 52 | 4 | 7.6923 | |
| ckim-dragen | SNP | * | map_l125_m0_e0 | het | 97.3570 | 98.4523 | 96.2857 | 80.0772 | 12468 | 196 | 12469 | 481 | 37 | 7.6923 | |
| ckim-dragen | SNP | ti | map_l250_m0_e0 | * | 96.5066 | 96.7883 | 96.2264 | 93.0796 | 1326 | 44 | 1326 | 52 | 4 | 7.6923 | |
| jmaeng-gatk | SNP | * | map_l250_m1_e0 | * | 68.9230 | 53.4340 | 97.0573 | 96.2285 | 3859 | 3363 | 3859 | 117 | 9 | 7.6923 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.1106 | 96.9697 | 99.2786 | 76.3393 | 1792 | 56 | 1789 | 13 | 1 | 7.6923 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | het | 97.9878 | 97.0541 | 98.9396 | 75.7755 | 1219 | 37 | 1213 | 13 | 1 | 7.6923 | |
| bgallagher-sentieon | INDEL | I1_5 | map_siren | het | 99.0779 | 98.9292 | 99.2271 | 81.4696 | 1663 | 18 | 1669 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 89.7493 | 83.4297 | 97.1047 | 92.9146 | 433 | 86 | 436 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 84.1893 | 75.7282 | 94.7791 | 94.2798 | 234 | 75 | 236 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 89.6631 | 83.2392 | 97.1616 | 92.9647 | 442 | 89 | 445 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 84.0230 | 75.3943 | 94.8819 | 94.3278 | 239 | 78 | 241 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 41.6667 | 83.3333 | 27.7778 | 84.0708 | 5 | 1 | 5 | 13 | 1 | 7.6923 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 96.4056 | 97.2318 | 95.5932 | 92.0227 | 281 | 8 | 282 | 13 | 1 | 7.6923 | |
| anovak-vg | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0.0000 | 87.6777 | 1 | 0 | 0 | 26 | 2 | 7.6923 | |
| anovak-vg | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0.0000 | 86.9347 | 1 | 0 | 0 | 26 | 2 | 7.6923 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 13.6986 | 9.0909 | 27.7778 | 57.1429 | 6 | 60 | 5 | 13 | 1 | 7.6923 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.2939 | 84.4229 | 99.3824 | 53.3363 | 2092 | 386 | 2092 | 13 | 1 | 7.6923 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | het | 95.7120 | 94.3709 | 97.0917 | 88.8376 | 855 | 51 | 868 | 26 | 2 | 7.6923 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e1 | het | 95.7962 | 94.4805 | 97.1491 | 88.8645 | 873 | 51 | 886 | 26 | 2 | 7.6923 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | * | 97.5855 | 97.7823 | 97.3896 | 88.3263 | 485 | 11 | 485 | 13 | 1 | 7.6923 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 92.6641 | 95.2381 | 90.2256 | 92.2449 | 120 | 6 | 120 | 13 | 1 | 7.6923 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | * | 92.3827 | 93.7063 | 91.0959 | 92.6633 | 134 | 9 | 133 | 13 | 1 | 7.6923 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | het | 99.5338 | 99.4803 | 99.5875 | 67.0941 | 15695 | 82 | 15691 | 65 | 5 | 7.6923 | |
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | het | 99.0220 | 98.9321 | 99.1120 | 76.4302 | 4354 | 47 | 4353 | 39 | 3 | 7.6923 | |
| hfeng-pmm2 | INDEL | * | map_l125_m0_e0 | het | 96.7218 | 97.7853 | 95.6811 | 90.4293 | 574 | 13 | 576 | 26 | 2 | 7.6923 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.4608 | 99.3080 | 95.6811 | 91.3754 | 287 | 2 | 288 | 13 | 1 | 7.6923 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.7262 | 94.6148 | 98.9340 | 44.5934 | 2407 | 137 | 2413 | 26 | 2 | 7.6923 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 83.0006 | 75.5556 | 92.0732 | 84.2949 | 544 | 176 | 604 | 52 | 4 | 7.6923 | |
| ckim-isaac | SNP | ti | map_l150_m2_e0 | het | 75.7150 | 61.0434 | 99.6704 | 79.9741 | 7863 | 5018 | 7863 | 26 | 2 | 7.6923 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e0 | * | 77.9188 | 64.0796 | 99.3822 | 82.5443 | 31374 | 17587 | 31369 | 195 | 15 | 7.6923 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e1 | * | 78.0470 | 64.2498 | 99.3903 | 82.5096 | 31794 | 17691 | 31789 | 195 | 15 | 7.6923 | |
| dgrover-gatk | INDEL | * | map_l150_m0_e0 | het | 96.6534 | 97.0674 | 96.2428 | 93.6769 | 331 | 10 | 333 | 13 | 1 | 7.6923 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2074 | 99.1262 | 99.2888 | 51.5248 | 1815 | 16 | 1815 | 13 | 1 | 7.6923 | |