PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5151-5200 / 86044 show all
qzeng-customSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtiHG002complexvarhetalt
97.0149
94.2029
100.0000
39.1447
1951218500
qzeng-customSNPtiHG002compoundhethetalt
98.4211
96.8912
100.0000
21.9547
5611855100
qzeng-customSNPtidecoy*
0.0000
0.0000
100.0000
99.9987
00200
qzeng-customSNPtidecoyhet
0.0000
100.0000
00000
qzeng-customSNPtidecoyhetalt
0.0000
100.0000
00000
qzeng-customSNPtidecoyhomalt
0.0000
0.0000
100.0000
99.9922
00200
qzeng-customSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
46.6667
80800
qzeng-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
96.5318
1201200
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.5294
97.1014
100.0000
91.7160
6727000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.6667
10100
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
10100
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.0000
20200
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
96.5318
1201200
qzeng-customSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
92.8571
10100
qzeng-customSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.1039
60600
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
80.0000
20200
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
98.5507
97.1429
100.0000
93.0712
3413700
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_51to200het
90.9091
83.3333
100.0000
98.1685
51500
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000