PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51851-51900 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.5314 | 99.8673 | 99.1977 | 62.4958 | 35372 | 47 | 35361 | 286 | 20 | 6.9930 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.2960 | 99.5274 | 99.0657 | 69.8134 | 45486 | 216 | 45486 | 429 | 30 | 6.9930 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.2960 | 99.5274 | 99.0657 | 69.8134 | 45486 | 216 | 45486 | 429 | 30 | 6.9930 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 38.6341 | 100.0000 | 23.9420 | 83.0324 | 1 | 0 | 198 | 629 | 44 | 6.9952 | |
| jmaeng-gatk | INDEL | * | map_l125_m1_e0 | het | 95.4569 | 98.1273 | 92.9279 | 92.1545 | 1310 | 25 | 1314 | 100 | 7 | 7.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 93.8151 | 98.7552 | 89.3458 | 92.9596 | 476 | 6 | 478 | 57 | 4 | 7.0175 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | het | 95.6303 | 96.7679 | 94.5192 | 88.5902 | 988 | 33 | 983 | 57 | 4 | 7.0175 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7872 | 99.8789 | 97.7191 | 41.8567 | 2475 | 3 | 2442 | 57 | 4 | 7.0175 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | het | 98.3041 | 99.5361 | 97.1022 | 91.0806 | 1931 | 9 | 1910 | 57 | 4 | 7.0175 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | het | 98.4331 | 99.3060 | 97.5755 | 90.8816 | 4722 | 33 | 4588 | 114 | 8 | 7.0175 | |
| dgrover-gatk | SNP | tv | * | * | 99.9211 | 99.9611 | 99.8812 | 22.3092 | 969313 | 377 | 969227 | 1153 | 81 | 7.0252 | |
| jlack-gatk | SNP | * | map_l100_m2_e0 | het | 95.7132 | 99.2694 | 92.4029 | 79.6895 | 46060 | 339 | 46049 | 3786 | 266 | 7.0259 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e1 | * | 96.0728 | 97.4778 | 94.7076 | 79.7669 | 29798 | 771 | 29527 | 1650 | 116 | 7.0303 | |
| jlack-gatk | SNP | * | map_l100_m2_e1 | het | 95.7463 | 99.2772 | 92.4580 | 79.7064 | 46559 | 339 | 46548 | 3797 | 267 | 7.0319 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.4739 | 99.4515 | 93.6694 | 63.2423 | 3989 | 22 | 3995 | 270 | 19 | 7.0370 | |
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | * | 95.9902 | 97.4706 | 94.5540 | 78.3647 | 28593 | 742 | 28335 | 1632 | 115 | 7.0466 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 31.4068 | 29.5238 | 33.5463 | 77.9887 | 310 | 740 | 315 | 624 | 44 | 7.0513 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m1_e0 | * | 95.2221 | 98.5390 | 92.1212 | 86.6783 | 1821 | 27 | 1824 | 156 | 11 | 7.0513 | |
| hfeng-pmm2 | SNP | * | map_l150_m0_e0 | het | 98.4569 | 98.8665 | 98.0507 | 83.2717 | 7850 | 90 | 7847 | 156 | 11 | 7.0513 | |
| ghariani-varprowl | SNP | tv | * | * | 98.9190 | 99.7874 | 98.0655 | 30.2667 | 967620 | 2062 | 967900 | 19093 | 1348 | 7.0602 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e0 | * | 96.0478 | 97.4585 | 94.6773 | 79.7239 | 29489 | 769 | 29225 | 1643 | 116 | 7.0603 | |
| ckim-dragen | SNP | tv | map_l125_m1_e0 | het | 97.6861 | 98.8149 | 96.5827 | 77.3870 | 10006 | 120 | 10005 | 354 | 25 | 7.0622 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8431 | 99.0551 | 98.6319 | 76.1009 | 19394 | 185 | 19394 | 269 | 19 | 7.0632 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8431 | 99.0551 | 98.6319 | 76.1009 | 19394 | 185 | 19394 | 269 | 19 | 7.0632 | |
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | het | 91.2586 | 96.8794 | 86.2542 | 81.2481 | 27506 | 886 | 27183 | 4332 | 306 | 7.0637 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.7598 | 99.6310 | 95.9575 | 59.6872 | 2430 | 9 | 2350 | 99 | 7 | 7.0707 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e0 | het | 91.4436 | 96.8927 | 86.5748 | 82.3864 | 28407 | 911 | 28071 | 4353 | 308 | 7.0756 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.4760 | 30.0699 | 25.2941 | 98.0122 | 43 | 100 | 43 | 127 | 9 | 7.0866 | |
| jmaeng-gatk | SNP | * | map_l250_m2_e1 | het | 73.9537 | 60.0874 | 96.1398 | 96.8694 | 3163 | 2101 | 3163 | 127 | 9 | 7.0866 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | * | 89.2166 | 81.7563 | 98.1753 | 78.5878 | 59194 | 13209 | 59183 | 1100 | 78 | 7.0909 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e1 | het | 91.4989 | 96.9163 | 86.6551 | 82.4293 | 28726 | 914 | 28383 | 4371 | 310 | 7.0922 | |
| jlack-gatk | SNP | * | map_l125_m2_e0 | het | 94.4864 | 99.0654 | 90.3119 | 83.7916 | 29044 | 274 | 29038 | 3115 | 221 | 7.0947 | |
| jlack-gatk | SNP | * | map_l125_m2_e1 | het | 94.5222 | 99.0756 | 90.3690 | 83.8291 | 29366 | 274 | 29360 | 3129 | 222 | 7.0949 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.1964 | 99.5470 | 98.8483 | 74.0177 | 14505 | 66 | 14505 | 169 | 12 | 7.1006 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.1964 | 99.5470 | 98.8483 | 74.0177 | 14505 | 66 | 14505 | 169 | 12 | 7.1006 | |
| jlack-gatk | SNP | * | map_l100_m1_e0 | het | 95.6776 | 99.2570 | 92.3473 | 78.4943 | 45022 | 337 | 45011 | 3730 | 265 | 7.1046 | |
| jlack-gatk | INDEL | * | segdup | * | 95.2733 | 98.4742 | 92.2739 | 95.5954 | 2517 | 39 | 2520 | 211 | 15 | 7.1090 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 58.3357 | 89.3782 | 43.2977 | 89.0534 | 345 | 41 | 365 | 478 | 34 | 7.1130 | |
| gduggal-bwavard | SNP | * | map_l100_m1_e0 | * | 96.4277 | 97.4269 | 95.4487 | 73.9277 | 70540 | 1863 | 69564 | 3317 | 236 | 7.1149 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.9813 | 85.4583 | 99.5823 | 47.6985 | 3338 | 568 | 3338 | 14 | 1 | 7.1429 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | het | 97.4816 | 97.2705 | 97.6936 | 82.4440 | 1176 | 33 | 1186 | 28 | 2 | 7.1429 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | het | 97.5348 | 97.2930 | 97.7778 | 83.2980 | 1222 | 34 | 1232 | 28 | 2 | 7.1429 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | het | 96.9800 | 95.5850 | 98.4163 | 88.7575 | 866 | 40 | 870 | 14 | 1 | 7.1429 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | het | 96.9264 | 95.4545 | 98.4444 | 88.8199 | 882 | 42 | 886 | 14 | 1 | 7.1429 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 22.2222 | 88.8889 | 0 | 0 | 4 | 14 | 1 | 7.1429 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 22.2222 | 88.1579 | 0 | 0 | 4 | 14 | 1 | 7.1429 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 3.4483 | 90.1024 | 0 | 0 | 1 | 28 | 2 | 7.1429 | |
| gduggal-snapfb | SNP | tv | tech_badpromoters | * | 90.4459 | 98.6111 | 83.5294 | 68.8645 | 71 | 1 | 71 | 14 | 1 | 7.1429 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6989 | 95.7055 | 95.6923 | 87.6614 | 312 | 14 | 311 | 14 | 1 | 7.1429 | |
| ckim-dragen | SNP | ti | map_l250_m1_e0 | het | 96.2459 | 97.1361 | 95.3719 | 90.8281 | 2883 | 85 | 2885 | 140 | 10 | 7.1429 | |