PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51801-51850 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | * | * | * | 99.2866 | 98.6511 | 99.9303 | 23.6837 | 3013415 | 41204 | 3013272 | 2101 | 144 | 6.8539 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e0 | het | 92.6002 | 97.4203 | 88.2346 | 79.7371 | 15370 | 407 | 15314 | 2042 | 140 | 6.8560 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 35.0259 | 100.0000 | 21.2312 | 82.4631 | 1 | 0 | 169 | 627 | 43 | 6.8581 | |
| ltrigg-rtg2 | SNP | tv | map_siren | * | 99.4071 | 99.1030 | 99.7130 | 49.8109 | 45518 | 412 | 45517 | 131 | 9 | 6.8702 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e1 | * | 95.2916 | 98.5044 | 92.2817 | 87.3451 | 1910 | 29 | 1913 | 160 | 11 | 6.8750 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8517 | 99.4416 | 98.2688 | 76.2612 | 9082 | 51 | 9082 | 160 | 11 | 6.8750 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8517 | 99.4416 | 98.2688 | 76.2612 | 9082 | 51 | 9082 | 160 | 11 | 6.8750 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 35.9909 | 40.9326 | 32.1138 | 96.9858 | 158 | 228 | 158 | 334 | 23 | 6.8862 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e1 | * | 89.5016 | 82.2404 | 98.1693 | 79.7702 | 61464 | 13273 | 61453 | 1146 | 79 | 6.8935 | |
| jmaeng-gatk | SNP | * | map_l250_m1_e0 | het | 72.0683 | 57.7077 | 95.9441 | 96.8258 | 2744 | 2011 | 2744 | 116 | 8 | 6.8966 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e1 | het | 94.5416 | 98.0519 | 91.2738 | 94.1930 | 906 | 18 | 910 | 87 | 6 | 6.8966 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 94.0939 | 98.8327 | 89.7887 | 93.3263 | 508 | 6 | 510 | 58 | 4 | 6.8966 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 94.0832 | 98.6590 | 89.9130 | 93.3633 | 515 | 7 | 517 | 58 | 4 | 6.8966 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | het | 97.4629 | 96.2864 | 98.6685 | 76.9451 | 2152 | 83 | 2149 | 29 | 2 | 6.8966 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | het | 99.1706 | 99.6047 | 98.7402 | 81.3769 | 2268 | 9 | 2273 | 29 | 2 | 6.8966 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8086 | 94.8250 | 98.8768 | 51.0057 | 2547 | 139 | 2553 | 29 | 2 | 6.8966 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | * | 73.9496 | 95.6522 | 60.2740 | 97.1350 | 44 | 2 | 44 | 29 | 2 | 6.8966 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | het | 69.4737 | 100.0000 | 53.2258 | 97.1702 | 33 | 0 | 33 | 29 | 2 | 6.8966 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | het | 96.3955 | 97.6311 | 95.1907 | 86.7502 | 577 | 14 | 574 | 29 | 2 | 6.8966 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 84.7368 | 95.3466 | 0 | 0 | 161 | 29 | 2 | 6.8966 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 80.6667 | 95.5264 | 0 | 0 | 121 | 29 | 2 | 6.8966 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.2678 | 97.2079 | 99.3509 | 74.1300 | 8878 | 255 | 8878 | 58 | 4 | 6.8966 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.2678 | 97.2079 | 99.3509 | 74.1300 | 8878 | 255 | 8878 | 58 | 4 | 6.8966 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | het | 98.4026 | 99.1729 | 97.6442 | 83.5954 | 1199 | 10 | 1202 | 29 | 2 | 6.8966 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e0 | het | 98.4217 | 99.1242 | 97.7291 | 84.1426 | 1245 | 11 | 1248 | 29 | 2 | 6.8966 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | het | 98.4365 | 99.1325 | 97.7502 | 84.2651 | 1257 | 11 | 1260 | 29 | 2 | 6.8966 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | het | 98.4778 | 97.2706 | 99.7153 | 57.2310 | 10157 | 285 | 10156 | 29 | 2 | 6.8966 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e0 | het | 84.8178 | 75.7016 | 96.4302 | 90.4936 | 15241 | 4892 | 15235 | 564 | 39 | 6.9149 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | * | 95.2850 | 98.5379 | 92.2401 | 87.2851 | 1887 | 28 | 1890 | 159 | 11 | 6.9182 | |
| anovak-vg | INDEL | C1_5 | * | het | 40.9055 | 77.7778 | 27.7500 | 90.6933 | 7 | 2 | 111 | 289 | 20 | 6.9204 | |
| ckim-dragen | SNP | * | map_l250_m2_e1 | het | 96.3314 | 96.9985 | 95.6733 | 91.4307 | 5106 | 158 | 5108 | 231 | 16 | 6.9264 | |
| jmaeng-gatk | SNP | * | map_l100_m2_e0 | * | 89.4136 | 82.0994 | 98.1585 | 79.7900 | 60724 | 13240 | 60713 | 1139 | 79 | 6.9359 | |
| jlack-gatk | INDEL | * | map_l100_m0_e0 | * | 93.6372 | 97.7607 | 89.8474 | 89.5254 | 1528 | 35 | 1531 | 173 | 12 | 6.9364 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8678 | 98.1204 | 99.6266 | 68.0485 | 19211 | 368 | 19212 | 72 | 5 | 6.9444 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.8678 | 98.1204 | 99.6266 | 68.0485 | 19211 | 368 | 19212 | 72 | 5 | 6.9444 | |
| jmaeng-gatk | SNP | * | map_l150_m2_e1 | het | 84.9216 | 75.8827 | 96.4049 | 90.5037 | 15452 | 4911 | 15446 | 576 | 40 | 6.9444 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2384 | 98.5913 | 97.8879 | 54.8387 | 6649 | 95 | 6674 | 144 | 10 | 6.9444 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7848 | 99.4179 | 94.2876 | 66.3675 | 4270 | 25 | 4275 | 259 | 18 | 6.9498 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3250 | 99.5294 | 99.1213 | 51.0494 | 17767 | 84 | 17824 | 158 | 11 | 6.9620 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 93.3626 | 97.9878 | 89.1544 | 38.6200 | 7207 | 148 | 7201 | 876 | 61 | 6.9635 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | het | 92.6451 | 97.4464 | 88.2947 | 79.7695 | 15531 | 407 | 15471 | 2051 | 143 | 6.9722 | |
| gduggal-snapfb | INDEL | C1_5 | * | het | 41.5584 | 88.8889 | 27.1186 | 82.3353 | 8 | 1 | 16 | 43 | 3 | 6.9767 | |
| ckim-isaac | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.1838 | 92.7372 | 95.6762 | 65.3122 | 1877 | 147 | 1903 | 86 | 6 | 6.9767 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 73.5901 | 72.3684 | 74.8538 | 88.1906 | 110 | 42 | 128 | 43 | 3 | 6.9767 | |
| rpoplin-dv42 | SNP | * | segdup | het | 99.7082 | 99.6651 | 99.7514 | 90.3344 | 17259 | 58 | 17253 | 43 | 3 | 6.9767 | |
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | het | 94.5436 | 98.1236 | 91.2155 | 94.1716 | 889 | 17 | 893 | 86 | 6 | 6.9767 | |
| asubramanian-gatk | INDEL | * | map_l150_m0_e0 | * | 90.5945 | 89.6887 | 91.5187 | 98.1956 | 461 | 53 | 464 | 43 | 3 | 6.9767 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.5410 | 98.7028 | 87.1034 | 79.6250 | 30739 | 404 | 30832 | 4565 | 319 | 6.9880 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 92.5410 | 98.7028 | 87.1034 | 79.6250 | 30739 | 404 | 30832 | 4565 | 319 | 6.9880 | |
| ckim-vqsr | SNP | ti | map_l100_m1_e0 | * | 77.5493 | 63.5768 | 99.3932 | 81.5266 | 30473 | 17458 | 30468 | 186 | 13 | 6.9893 | |