PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51701-51750 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7785 | 99.2790 | 98.2829 | 78.8740 | 28505 | 207 | 28505 | 498 | 33 | 6.6265 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 89.0414 | 87.1669 | 90.9983 | 69.2267 | 2126 | 313 | 2133 | 211 | 14 | 6.6351 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 87.0072 | 98.9272 | 77.6508 | 87.8604 | 3873 | 42 | 3874 | 1115 | 74 | 6.6368 | |
| ckim-dragen | SNP | * | map_l250_m2_e0 | het | 96.3481 | 96.9965 | 95.7083 | 91.3532 | 5038 | 156 | 5040 | 226 | 15 | 6.6372 | |
| gduggal-bwavard | SNP | * | map_l100_m2_e1 | het | 95.3077 | 97.5777 | 93.1409 | 79.2994 | 45762 | 1136 | 45178 | 3327 | 221 | 6.6426 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e1 | * | 84.7588 | 74.8379 | 97.7121 | 85.2730 | 35325 | 11877 | 35319 | 827 | 55 | 6.6505 | |
| jlack-gatk | SNP | * | map_l250_m2_e1 | het | 91.1258 | 98.0243 | 85.1345 | 94.1114 | 5160 | 104 | 5160 | 901 | 60 | 6.6593 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 95.4195 | 98.1084 | 92.8741 | 89.6484 | 778 | 15 | 782 | 60 | 4 | 6.6667 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 95.5127 | 98.1481 | 93.0151 | 89.6916 | 795 | 15 | 799 | 60 | 4 | 6.6667 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | * | 91.3733 | 93.0070 | 89.7959 | 93.4812 | 133 | 10 | 132 | 15 | 1 | 6.6667 | |
| jmaeng-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.6389 | 99.6975 | 99.5803 | 59.3397 | 17797 | 54 | 17796 | 75 | 5 | 6.6667 | |
| jmaeng-gatk | INDEL | * | map_l250_m1_e0 | het | 90.5473 | 95.7895 | 85.8491 | 97.7177 | 182 | 8 | 182 | 30 | 2 | 6.6667 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e0 | het | 91.4027 | 96.1905 | 87.0690 | 97.8055 | 202 | 8 | 202 | 30 | 2 | 6.6667 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | het | 91.4414 | 96.2085 | 87.1245 | 97.8577 | 203 | 8 | 203 | 30 | 2 | 6.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | * | 83.8794 | 96.1957 | 74.3590 | 95.6707 | 177 | 7 | 174 | 60 | 4 | 6.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | het | 79.3333 | 98.3471 | 66.4804 | 96.1331 | 119 | 2 | 119 | 60 | 4 | 6.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | * | 83.9566 | 96.2162 | 74.4681 | 95.7604 | 178 | 7 | 175 | 60 | 4 | 6.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | het | 79.4702 | 98.3607 | 66.6667 | 96.2081 | 120 | 2 | 120 | 60 | 4 | 6.6667 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | het | 96.7458 | 96.1538 | 97.3451 | 92.1972 | 550 | 22 | 550 | 15 | 1 | 6.6667 | |
| ltrigg-rtg2 | SNP | * | map_l100_m0_e0 | het | 98.1524 | 96.5763 | 99.7808 | 50.2243 | 20479 | 726 | 20484 | 45 | 3 | 6.6667 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m1_e0 | het | 98.1622 | 96.5077 | 99.8745 | 59.1812 | 11938 | 432 | 11940 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | het | 93.2292 | 94.2105 | 92.2680 | 95.0218 | 179 | 11 | 179 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | het | 93.8679 | 94.7619 | 92.9907 | 95.2339 | 199 | 11 | 199 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | het | 93.8967 | 94.7867 | 93.0233 | 95.3524 | 200 | 11 | 200 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | het | 99.0760 | 98.8142 | 99.3392 | 78.2192 | 2250 | 27 | 2255 | 15 | 1 | 6.6667 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.4979 | 97.1751 | 93.8776 | 69.0657 | 172 | 5 | 230 | 15 | 1 | 6.6667 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3011 | 99.7679 | 98.8387 | 65.0271 | 3869 | 9 | 3830 | 45 | 3 | 6.6667 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.4085 | 98.5294 | 87.0036 | 79.8311 | 1206 | 18 | 1205 | 180 | 12 | 6.6667 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | homalt | 83.5293 | 73.6739 | 96.4286 | 89.2418 | 375 | 134 | 405 | 15 | 1 | 6.6667 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 96.1099 | 99.1242 | 93.2735 | 89.2977 | 1245 | 11 | 1248 | 90 | 6 | 6.6667 | |
| ckim-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 96.1455 | 99.1325 | 93.3333 | 89.3667 | 1257 | 11 | 1260 | 90 | 6 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 94.6665 | 97.2826 | 92.1875 | 94.6711 | 179 | 5 | 177 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 93.0049 | 97.5207 | 88.8889 | 94.9457 | 118 | 3 | 120 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 94.6948 | 97.2973 | 92.2280 | 94.7767 | 180 | 5 | 178 | 15 | 1 | 6.6667 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 93.0589 | 97.5410 | 88.9706 | 95.0292 | 119 | 3 | 121 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.6621 | 99.8310 | 99.4938 | 54.7565 | 2954 | 5 | 2948 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.5376 | 99.8908 | 99.1870 | 59.6192 | 1829 | 2 | 1830 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7501 | 99.8753 | 99.6251 | 50.1743 | 4006 | 5 | 3986 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6468 | 99.8821 | 99.4127 | 54.4823 | 2541 | 3 | 2539 | 15 | 1 | 6.6667 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.2933 | 90.4234 | 98.5092 | 63.1853 | 17704 | 1875 | 17841 | 270 | 18 | 6.6667 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.2933 | 90.4234 | 98.5092 | 63.1853 | 17704 | 1875 | 17841 | 270 | 18 | 6.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2519 | 96.8208 | 95.6897 | 69.9482 | 335 | 11 | 333 | 15 | 1 | 6.6667 | |
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | het | 96.6744 | 97.6540 | 95.7143 | 93.1170 | 333 | 8 | 335 | 15 | 1 | 6.6667 | |
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | * | 90.0178 | 90.3114 | 89.7260 | 93.4821 | 261 | 28 | 262 | 30 | 2 | 6.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 90.4534 | 84.0140 | 97.9620 | 90.4179 | 720 | 137 | 721 | 15 | 1 | 6.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 85.0767 | 76.2575 | 96.2025 | 92.3568 | 379 | 118 | 380 | 15 | 1 | 6.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 90.3357 | 83.7931 | 97.9866 | 90.5301 | 729 | 141 | 730 | 15 | 1 | 6.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 84.9321 | 75.9843 | 96.2687 | 92.4165 | 386 | 122 | 387 | 15 | 1 | 6.6667 | |
| astatham-gatk | SNP | ti | map_l250_m0_e0 | het | 91.6667 | 85.9743 | 98.1663 | 94.6856 | 803 | 131 | 803 | 15 | 1 | 6.6667 | |
| astatham-gatk | INDEL | D1_5 | map_siren | het | 97.1940 | 95.7839 | 98.6462 | 82.2862 | 2181 | 96 | 2186 | 30 | 2 | 6.6667 | |