PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51601-51650 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | * | 91.6223 | 96.6094 | 87.1248 | 82.6892 | 10970 | 385 | 10942 | 1617 | 102 | 6.3080 | |
| jlack-gatk | SNP | tv | map_l125_m0_e0 | * | 93.0649 | 98.2657 | 88.3869 | 84.2156 | 6516 | 115 | 6515 | 856 | 54 | 6.3084 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e1 | het | 88.5956 | 81.7375 | 96.7099 | 87.4772 | 24227 | 5413 | 24221 | 824 | 52 | 6.3107 | |
| ckim-gatk | INDEL | * | map_l150_m1_e0 | het | 93.9968 | 98.4795 | 89.9044 | 93.5685 | 842 | 13 | 846 | 95 | 6 | 6.3158 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.8428 | 99.7468 | 94.1030 | 63.9275 | 1576 | 4 | 1516 | 95 | 6 | 6.3158 | |
| dgrover-gatk | SNP | ti | segdup | * | 99.6780 | 99.8413 | 99.5153 | 89.9275 | 19506 | 31 | 19504 | 95 | 6 | 6.3158 | |
| ckim-vqsr | SNP | ti | * | het | 99.5238 | 99.1280 | 99.9229 | 24.8520 | 1270713 | 11178 | 1270665 | 981 | 62 | 6.3201 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | * | 85.8670 | 98.1291 | 76.3290 | 43.9481 | 17151 | 327 | 17345 | 5379 | 340 | 6.3209 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 85.9498 | 90.2468 | 82.0433 | 90.3390 | 768 | 83 | 795 | 174 | 11 | 6.3218 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | het | 92.1457 | 87.4909 | 97.3237 | 81.8820 | 39685 | 5674 | 39674 | 1091 | 69 | 6.3245 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | * | 99.2798 | 99.6598 | 98.9027 | 74.7802 | 30465 | 104 | 29925 | 332 | 21 | 6.3253 | |
| ckim-dragen | SNP | tv | map_l250_m2_e1 | het | 96.2700 | 96.5394 | 96.0020 | 91.4117 | 1897 | 68 | 1897 | 79 | 5 | 6.3291 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 93.5776 | 98.9650 | 88.7464 | 88.5144 | 1243 | 13 | 1246 | 158 | 10 | 6.3291 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | het | 90.7385 | 97.4983 | 84.8553 | 82.7554 | 10289 | 264 | 10259 | 1831 | 116 | 6.3353 | |
| gduggal-bwaplat | SNP | ti | segdup | * | 98.6403 | 98.0243 | 99.2642 | 93.3166 | 19151 | 386 | 19157 | 142 | 9 | 6.3380 | |
| ckim-dragen | SNP | tv | map_l150_m2_e1 | het | 97.5102 | 98.6119 | 96.4328 | 82.1323 | 7246 | 102 | 7245 | 268 | 17 | 6.3433 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 86.6965 | 89.5833 | 83.9898 | 89.6733 | 645 | 75 | 661 | 126 | 8 | 6.3492 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | * | 81.2847 | 76.3062 | 86.9582 | 90.3597 | 2293 | 712 | 2307 | 346 | 22 | 6.3584 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.4385 | 98.6779 | 96.2299 | 81.4052 | 6792 | 91 | 6815 | 267 | 17 | 6.3670 | |
| gduggal-bwavard | SNP | tv | map_l100_m1_e0 | * | 95.8710 | 97.8083 | 94.0091 | 75.1618 | 23964 | 537 | 23883 | 1522 | 97 | 6.3732 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | * | 99.2792 | 99.6596 | 98.9018 | 74.7286 | 30155 | 103 | 29629 | 329 | 21 | 6.3830 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 82.5309 | 93.0070 | 74.1758 | 91.4794 | 133 | 10 | 135 | 47 | 3 | 6.3830 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.2746 | 87.2549 | 66.1871 | 95.4411 | 89 | 13 | 92 | 47 | 3 | 6.3830 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 94.4890 | 97.9879 | 91.2313 | 91.8168 | 487 | 10 | 489 | 47 | 3 | 6.3830 | |
| ckim-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 94.8781 | 98.7903 | 91.2639 | 91.8584 | 490 | 6 | 491 | 47 | 3 | 6.3830 | |
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | het | 95.8049 | 96.1802 | 95.4325 | 92.0387 | 982 | 39 | 982 | 47 | 3 | 6.3830 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1026 | 99.7251 | 98.4878 | 62.3729 | 6167 | 17 | 6122 | 94 | 6 | 6.3830 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.8203 | 99.3835 | 98.2634 | 72.4925 | 30951 | 192 | 30951 | 547 | 35 | 6.3985 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.8203 | 99.3835 | 98.2634 | 72.4925 | 30951 | 192 | 30951 | 547 | 35 | 6.3985 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.8195 | 97.1685 | 90.6935 | 51.4915 | 7241 | 211 | 7153 | 734 | 47 | 6.4033 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | * | 91.6730 | 96.6093 | 87.2166 | 82.7232 | 11112 | 390 | 11080 | 1624 | 104 | 6.4039 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.0773 | 99.6780 | 96.5272 | 70.4668 | 2167 | 7 | 2168 | 78 | 5 | 6.4103 | |
| ciseli-custom | INDEL | C1_5 | * | het | 47.4725 | 44.4444 | 50.9434 | 97.6237 | 4 | 5 | 81 | 78 | 5 | 6.4103 | |
| jlack-gatk | INDEL | * | map_siren | het | 95.6389 | 98.6025 | 92.8482 | 85.9136 | 4445 | 63 | 4453 | 343 | 22 | 6.4140 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | het | 95.3358 | 98.5019 | 92.3669 | 91.9308 | 1315 | 20 | 1319 | 109 | 7 | 6.4220 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 69.9603 | 92.1053 | 56.4000 | 92.3571 | 140 | 12 | 141 | 109 | 7 | 6.4220 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4242 | 99.5483 | 99.3004 | 56.7770 | 35259 | 160 | 35343 | 249 | 16 | 6.4257 | |
| anovak-vg | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 13.6364 | 74.7449 | 0 | 0 | 27 | 171 | 11 | 6.4328 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | * | 95.2687 | 97.5497 | 93.0920 | 81.8831 | 19229 | 483 | 19055 | 1414 | 91 | 6.4356 | |
| jlack-gatk | INDEL | * | map_l125_m2_e0 | * | 94.7169 | 98.2240 | 91.4515 | 90.7417 | 2157 | 39 | 2161 | 202 | 13 | 6.4356 | |
| bgallagher-sentieon | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2725 | 99.8634 | 98.6886 | 65.8031 | 17544 | 24 | 17534 | 233 | 15 | 6.4378 | |
| ltrigg-rtg2 | SNP | * | * | * | 99.8749 | 99.8935 | 99.8562 | 17.0058 | 3051374 | 3252 | 3051531 | 4395 | 283 | 6.4391 | |
| jmaeng-gatk | SNP | * | map_l125_m1_e0 | het | 88.1536 | 81.0158 | 96.6706 | 86.7253 | 23002 | 5390 | 22996 | 792 | 51 | 6.4394 | |
| ckim-dragen | SNP | tv | map_l150_m2_e0 | het | 97.5182 | 98.6211 | 96.4396 | 82.0747 | 7152 | 100 | 7151 | 264 | 17 | 6.4394 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6674 | 99.7924 | 99.5426 | 42.2165 | 6730 | 14 | 6747 | 31 | 2 | 6.4516 | |
| ltrigg-rtg2 | SNP | * | map_l150_m1_e0 | het | 98.0986 | 96.4227 | 99.8338 | 58.7339 | 18625 | 691 | 18625 | 31 | 2 | 6.4516 | |
| qzeng-custom | INDEL | D16_PLUS | map_siren | het | 51.9122 | 88.4615 | 36.7347 | 86.9217 | 69 | 9 | 108 | 186 | 12 | 6.4516 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5098 | 99.3105 | 99.7100 | 37.0828 | 10658 | 74 | 10658 | 31 | 2 | 6.4516 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 93.4933 | 99.0074 | 88.5609 | 87.9481 | 1197 | 12 | 1200 | 155 | 10 | 6.4516 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3017 | 99.3248 | 99.2786 | 49.2620 | 4266 | 29 | 4266 | 31 | 2 | 6.4516 | |