PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51451-51500 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | * | func_cds | het | 99.3276 | 99.2653 | 99.3900 | 36.7079 | 11079 | 82 | 11079 | 68 | 4 | 5.8824 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | het | 78.5920 | 66.7348 | 95.5729 | 91.8237 | 2937 | 1464 | 2936 | 136 | 8 | 5.8824 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 3.3784 | 2.4272 | 5.5556 | 80.2198 | 5 | 201 | 1 | 17 | 1 | 5.8824 | |
| jlack-gatk | INDEL | I1_5 | map_siren | het | 96.7640 | 98.4533 | 95.1317 | 84.9119 | 1655 | 26 | 1661 | 85 | 5 | 5.8824 | |
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | het | 96.5459 | 97.9472 | 95.1841 | 92.9709 | 334 | 7 | 336 | 17 | 1 | 5.8824 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0197 | 98.8406 | 95.2646 | 88.9606 | 341 | 4 | 342 | 17 | 1 | 5.8824 | |
| hfeng-pmm3 | SNP | * | map_l250_m1_e0 | het | 98.6931 | 98.4648 | 98.9225 | 88.7103 | 4682 | 73 | 4682 | 51 | 3 | 5.8824 | |
| hfeng-pmm3 | SNP | ti | map_l250_m0_e0 | het | 98.2343 | 98.2869 | 98.1818 | 93.2251 | 918 | 16 | 918 | 17 | 1 | 5.8824 | |
| ckim-isaac | SNP | * | map_l250_m1_e0 | het | 66.7411 | 50.2629 | 99.2937 | 91.8401 | 2390 | 2365 | 2390 | 17 | 1 | 5.8824 | |
| raldana-dualsentieon | INDEL | I1_5 | map_siren | het | 98.5075 | 98.0369 | 98.9826 | 78.7269 | 1648 | 33 | 1654 | 17 | 1 | 5.8824 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.8272 | 96.2865 | 99.4180 | 65.5827 | 2904 | 112 | 2904 | 17 | 1 | 5.8824 | |
| raldana-dualsentieon | SNP | ti | map_l100_m1_e0 | * | 99.3366 | 99.3470 | 99.3262 | 62.8885 | 47618 | 313 | 47611 | 323 | 19 | 5.8824 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | het | 54.4721 | 37.6880 | 98.2090 | 64.1838 | 4662 | 7708 | 4661 | 85 | 5 | 5.8824 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | het | 98.8788 | 98.0660 | 99.7052 | 53.2399 | 45991 | 907 | 45990 | 136 | 8 | 5.8824 | |
| ltrigg-rtg2 | SNP | ti | map_siren | het | 99.2569 | 98.8202 | 99.6976 | 45.2238 | 61645 | 736 | 61646 | 187 | 11 | 5.8824 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.5027 | 97.6813 | 99.3380 | 83.9369 | 2654 | 63 | 2551 | 17 | 1 | 5.8824 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.5285 | 98.0726 | 98.9887 | 85.3252 | 1730 | 34 | 1664 | 17 | 1 | 5.8824 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 76.1364 | 66.6667 | 88.7417 | 97.5582 | 2 | 1 | 134 | 17 | 1 | 5.8824 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 95.1589 | 98.8220 | 91.7576 | 91.8438 | 755 | 9 | 757 | 68 | 4 | 5.8824 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 95.1951 | 98.8312 | 91.8171 | 91.9100 | 761 | 9 | 763 | 68 | 4 | 5.8824 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 91.3934 | 89.9194 | 92.9167 | 91.3840 | 446 | 50 | 446 | 34 | 2 | 5.8824 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1282 | 98.9531 | 99.3039 | 35.7393 | 7278 | 77 | 7276 | 51 | 3 | 5.8824 | |
| asubramanian-gatk | INDEL | * | map_l250_m0_e0 | het | 80.3419 | 88.6792 | 73.4375 | 98.2773 | 47 | 6 | 47 | 17 | 1 | 5.8824 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 13.9241 | 82.0455 | 0 | 0 | 11 | 68 | 4 | 5.8824 | |
| astatham-gatk | INDEL | * | map_l150_m0_e0 | het | 95.0292 | 95.0147 | 95.0437 | 93.4915 | 324 | 17 | 326 | 17 | 1 | 5.8824 | |
| gduggal-snapfb | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 10.5263 | 90.1554 | 0 | 0 | 2 | 17 | 1 | 5.8824 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 79.2090 | 80.0667 | 78.3696 | 91.0972 | 8648 | 2153 | 8681 | 2396 | 141 | 5.8848 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | het | 94.4719 | 98.1303 | 91.0764 | 80.3818 | 15640 | 298 | 15585 | 1527 | 90 | 5.8939 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 56.2607 | 88.9328 | 41.1449 | 83.1108 | 1125 | 140 | 1150 | 1645 | 97 | 5.8967 | |
| ghariani-varprowl | SNP | ti | segdup | * | 98.2251 | 99.6929 | 96.7998 | 91.5895 | 19477 | 60 | 19480 | 644 | 38 | 5.9006 | |
| jlack-gatk | SNP | tv | map_l150_m1_e0 | * | 94.3885 | 98.6712 | 90.4622 | 83.2378 | 10767 | 145 | 10765 | 1135 | 67 | 5.9031 | |
| bgallagher-sentieon | SNP | * | * | * | 99.9296 | 99.9673 | 99.8919 | 18.9151 | 3053620 | 999 | 3053471 | 3303 | 195 | 5.9037 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | het | 88.6343 | 97.2835 | 81.3975 | 85.0700 | 7055 | 197 | 7036 | 1608 | 95 | 5.9080 | |
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | het | 88.3469 | 97.2934 | 80.9072 | 84.0922 | 6758 | 188 | 6742 | 1591 | 94 | 5.9082 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 61.4131 | 61.8391 | 60.9929 | 85.1344 | 269 | 166 | 344 | 220 | 13 | 5.9091 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.8789 | 99.0654 | 69.7740 | 90.1347 | 1484 | 14 | 1482 | 642 | 38 | 5.9190 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3470 | 98.2759 | 88.8889 | 80.5601 | 2964 | 52 | 2968 | 371 | 22 | 5.9299 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 26.8960 | 70.2970 | 16.6292 | 88.2926 | 71 | 30 | 74 | 371 | 22 | 5.9299 | |
| ckim-isaac | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.1078 | 92.3077 | 95.9796 | 65.5314 | 2784 | 232 | 2817 | 118 | 7 | 5.9322 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 49.7888 | 53.3686 | 46.6591 | 94.6882 | 808 | 706 | 824 | 942 | 56 | 5.9448 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | het | 93.6309 | 97.7486 | 89.8461 | 85.7790 | 12591 | 290 | 12494 | 1412 | 84 | 5.9490 | |
| jlack-gatk | SNP | tv | map_l250_m0_e0 | * | 89.3051 | 96.6013 | 83.0337 | 95.8027 | 739 | 26 | 739 | 151 | 9 | 5.9603 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 94.9786 | 98.7603 | 91.4758 | 91.3901 | 717 | 9 | 719 | 67 | 4 | 5.9702 | |
| jli-custom | SNP | tv | * | * | 99.9049 | 99.9528 | 99.8570 | 21.1774 | 969232 | 458 | 969166 | 1388 | 83 | 5.9798 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e1 | het | 93.6574 | 97.7641 | 89.8818 | 85.8419 | 12724 | 291 | 12623 | 1421 | 85 | 5.9817 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 48.7545 | 54.7591 | 43.9366 | 94.6836 | 466 | 385 | 471 | 601 | 36 | 5.9900 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.1905 | 52.7778 | 27.5362 | 94.7767 | 19 | 17 | 19 | 50 | 3 | 6.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.0045 | 99.8174 | 98.2047 | 40.5930 | 2733 | 5 | 2735 | 50 | 3 | 6.0000 | |
| ltrigg-rtg1 | INDEL | * | map_siren | het | 97.4658 | 96.1180 | 98.8519 | 76.2761 | 4333 | 175 | 4305 | 50 | 3 | 6.0000 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | het | 88.7208 | 97.3054 | 81.5281 | 85.1064 | 7150 | 198 | 7128 | 1615 | 97 | 6.0062 | |