PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51051-51100 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | het | 81.9515 | 96.3612 | 71.2908 | 92.3358 | 5005 | 189 | 4954 | 1995 | 92 | 4.6115 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 74.2078 | 71.3768 | 77.2727 | 87.9781 | 197 | 79 | 221 | 65 | 3 | 4.6154 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | * | 99.3627 | 99.3970 | 99.3284 | 65.5143 | 73518 | 446 | 73507 | 497 | 23 | 4.6278 | |
| ltrigg-rtg1 | SNP | tv | * | * | 99.8285 | 99.8863 | 99.7709 | 19.9654 | 968593 | 1103 | 968859 | 2225 | 103 | 4.6292 | |
| jlack-gatk | INDEL | * | map_l125_m2_e1 | het | 92.6447 | 98.1534 | 87.7215 | 91.9821 | 1382 | 26 | 1386 | 194 | 9 | 4.6392 | |
| ckim-gatk | SNP | tv | map_siren | * | 92.9580 | 88.1058 | 98.3758 | 71.0821 | 40467 | 5463 | 40459 | 668 | 31 | 4.6407 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | het | 98.7761 | 99.4907 | 98.0716 | 79.3788 | 12307 | 63 | 12053 | 237 | 11 | 4.6414 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | het | 82.0702 | 96.3526 | 71.4754 | 92.4111 | 5072 | 192 | 5019 | 2003 | 93 | 4.6430 | |
| raldana-dualsentieon | SNP | * | map_siren | * | 99.5640 | 99.5698 | 99.5582 | 54.3006 | 145599 | 629 | 145576 | 646 | 30 | 4.6440 | |
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | * | 75.2577 | 93.5897 | 62.9310 | 97.7692 | 73 | 5 | 73 | 43 | 2 | 4.6512 | |
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | het | 69.3878 | 96.2264 | 54.2553 | 97.9008 | 51 | 2 | 51 | 43 | 2 | 4.6512 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 21.0702 | 87.1009 | 0 | 0 | 63 | 236 | 11 | 4.6610 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.3394 | 98.7572 | 97.9251 | 69.6626 | 45134 | 568 | 45544 | 965 | 45 | 4.6632 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.3394 | 98.7572 | 97.9251 | 69.6626 | 45134 | 568 | 45544 | 965 | 45 | 4.6632 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | * | 93.5292 | 97.4826 | 89.8840 | 82.4074 | 18897 | 488 | 18668 | 2101 | 98 | 4.6645 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | het | 98.9249 | 99.5547 | 98.3030 | 76.7768 | 19002 | 85 | 18595 | 321 | 15 | 4.6729 | |
| jlack-gatk | SNP | tv | map_l250_m1_e0 | het | 88.8718 | 97.2020 | 81.8567 | 93.7753 | 1737 | 50 | 1737 | 385 | 18 | 4.6753 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.5865 | 98.1950 | 77.4326 | 84.5229 | 14308 | 263 | 14380 | 4191 | 196 | 4.6767 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.5865 | 98.1950 | 77.4326 | 84.5229 | 14308 | 263 | 14380 | 4191 | 196 | 4.6767 | |
| jlack-gatk | INDEL | * | map_l125_m2_e0 | het | 92.6228 | 98.1308 | 87.7002 | 91.9195 | 1365 | 26 | 1369 | 192 | 9 | 4.6875 | |
| ltrigg-rtg1 | SNP | ti | map_siren | het | 99.2961 | 98.9388 | 99.6561 | 47.8678 | 61719 | 662 | 61718 | 213 | 10 | 4.6948 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.8529 | 96.2516 | 93.4942 | 76.5691 | 3030 | 118 | 3061 | 213 | 10 | 4.6948 | |
| jmaeng-gatk | SNP | tv | map_l125_m0_e0 | * | 75.4933 | 61.9967 | 96.5015 | 90.4918 | 4111 | 2520 | 4110 | 149 | 7 | 4.6980 | |
| mlin-fermikit | SNP | ti | map_l125_m2_e0 | het | 62.0977 | 45.3857 | 98.2903 | 64.2784 | 8567 | 10309 | 8566 | 149 | 7 | 4.6980 | |
| ciseli-custom | SNP | tv | map_l250_m0_e0 | het | 59.1512 | 52.9720 | 66.9623 | 96.1499 | 303 | 269 | 302 | 149 | 7 | 4.6980 | |
| raldana-dualsentieon | SNP | * | map_l100_m1_e0 | * | 99.3579 | 99.3895 | 99.3263 | 63.6563 | 71961 | 442 | 71950 | 488 | 23 | 4.7131 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e1 | * | 92.9289 | 98.5861 | 87.8857 | 91.6492 | 767 | 11 | 769 | 106 | 5 | 4.7170 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | het | 98.9240 | 99.5550 | 98.3009 | 76.7289 | 18792 | 84 | 18398 | 318 | 15 | 4.7170 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | het | 90.2624 | 97.3906 | 84.1064 | 88.1487 | 4964 | 133 | 4932 | 932 | 44 | 4.7210 | |
| jli-custom | SNP | ti | segdup | * | 99.6094 | 99.8669 | 99.3533 | 88.6519 | 19511 | 26 | 19511 | 127 | 6 | 4.7244 | |
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | * | 98.7920 | 99.4784 | 98.1149 | 82.5537 | 7820 | 41 | 7703 | 148 | 7 | 4.7297 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 74.2906 | 94.9819 | 61.0017 | 81.9477 | 10259 | 542 | 10341 | 6611 | 313 | 4.7345 | |
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | het | 85.9375 | 96.6599 | 77.3564 | 84.6449 | 4254 | 147 | 4243 | 1242 | 59 | 4.7504 | |
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | het | 93.0274 | 98.3804 | 88.2269 | 82.2633 | 9962 | 164 | 9937 | 1326 | 63 | 4.7511 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | het | 85.1126 | 94.8718 | 77.1739 | 96.1842 | 74 | 4 | 71 | 21 | 1 | 4.7619 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.4471 | 97.6589 | 93.3333 | 93.6299 | 292 | 7 | 294 | 21 | 1 | 4.7619 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5905 | 97.7346 | 93.5385 | 94.1746 | 302 | 7 | 304 | 21 | 1 | 4.7619 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.6989 | 97.7918 | 93.6937 | 94.1905 | 310 | 7 | 312 | 21 | 1 | 4.7619 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e1 | * | 94.2377 | 98.7900 | 90.0865 | 89.9406 | 1143 | 14 | 1145 | 126 | 6 | 4.7619 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 94.8373 | 97.9424 | 91.9231 | 91.0821 | 476 | 10 | 478 | 42 | 2 | 4.7619 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.7398 | 94.7570 | 98.8075 | 51.0833 | 1735 | 96 | 1740 | 21 | 1 | 4.7619 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | het | 44.6395 | 28.9183 | 97.8170 | 82.5282 | 941 | 2313 | 941 | 21 | 1 | 4.7619 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e1 | het | 44.9323 | 29.1604 | 97.8637 | 82.7453 | 962 | 2337 | 962 | 21 | 1 | 4.7619 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8441 | 99.5400 | 98.1579 | 64.3471 | 2164 | 10 | 2238 | 42 | 2 | 4.7619 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.2195 | 99.3511 | 97.1134 | 65.4886 | 1378 | 9 | 1413 | 42 | 2 | 4.7619 | |
| qzeng-custom | INDEL | I6_15 | map_siren | * | 71.0638 | 81.6393 | 62.9139 | 77.5520 | 249 | 56 | 285 | 168 | 8 | 4.7619 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 32.5779 | 41.6667 | 26.7442 | 96.8657 | 115 | 161 | 115 | 315 | 15 | 4.7619 | |
| asubramanian-gatk | SNP | * | * | hetalt | 94.8157 | 94.4891 | 95.1445 | 47.6709 | 823 | 48 | 823 | 42 | 2 | 4.7619 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.5377 | 97.4763 | 93.6747 | 94.4249 | 309 | 8 | 311 | 21 | 1 | 4.7619 | |
| jmaeng-gatk | SNP | tv | map_l250_m0_e0 | * | 61.3757 | 45.4902 | 94.3089 | 98.2747 | 348 | 417 | 348 | 21 | 1 | 4.7619 | |