PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50451-50500 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | het | 97.8706 | 99.5778 | 96.2209 | 80.3517 | 20048 | 85 | 19427 | 763 | 22 | 2.8834 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.9120 | 89.3082 | 84.6411 | 75.9718 | 2272 | 272 | 2276 | 413 | 12 | 2.9056 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | * | 99.4052 | 99.4898 | 99.3207 | 66.9624 | 25154 | 129 | 25150 | 172 | 5 | 2.9070 | |
| ciseli-custom | SNP | tv | HG002complexvar | het | 94.7007 | 95.5637 | 93.8531 | 24.0959 | 144047 | 6687 | 143323 | 9387 | 273 | 2.9083 | |
| jlack-gatk | SNP | * | * | het | 99.5639 | 99.9321 | 99.1985 | 27.0831 | 1872315 | 1272 | 1872190 | 15127 | 441 | 2.9153 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 52.8122 | 77.0492 | 40.1747 | 78.2319 | 47 | 14 | 92 | 137 | 4 | 2.9197 | |
| mlin-fermikit | SNP | * | map_l100_m0_e0 | het | 57.3538 | 40.4669 | 98.4278 | 57.0061 | 8581 | 12624 | 8577 | 137 | 4 | 2.9197 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | het | 74.4004 | 68.8974 | 80.8587 | 84.6760 | 8967 | 4048 | 8964 | 2122 | 62 | 2.9218 | |
| mlin-fermikit | SNP | * | map_l100_m2_e1 | het | 71.9034 | 56.5824 | 98.6024 | 57.9966 | 26536 | 20362 | 26528 | 376 | 11 | 2.9255 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 26.2348 | 75.6579 | 15.8687 | 80.7530 | 115 | 37 | 116 | 615 | 18 | 2.9268 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | het | 98.1785 | 99.6221 | 96.7760 | 76.7928 | 29528 | 112 | 28607 | 953 | 28 | 2.9381 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.9766 | 49.2569 | 87.2897 | 84.9168 | 464 | 478 | 467 | 68 | 2 | 2.9412 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | het | 93.6867 | 98.2964 | 89.4900 | 93.6438 | 577 | 10 | 579 | 68 | 2 | 2.9412 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | * | 82.1918 | 77.4194 | 87.5912 | 95.2848 | 240 | 70 | 240 | 34 | 1 | 2.9412 | |
| mlin-fermikit | SNP | * | map_l250_m2_e0 | het | 43.6369 | 28.0901 | 97.7227 | 83.2153 | 1459 | 3735 | 1459 | 34 | 1 | 2.9412 | |
| mlin-fermikit | SNP | * | map_l250_m2_e1 | het | 43.9700 | 28.3625 | 97.7734 | 83.3895 | 1493 | 3771 | 1493 | 34 | 1 | 2.9412 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | * | 98.2211 | 98.4437 | 97.9996 | 88.4416 | 4997 | 79 | 4997 | 102 | 3 | 2.9412 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 52.7792 | 76.2712 | 40.3509 | 76.8057 | 45 | 14 | 92 | 136 | 4 | 2.9412 | |
| qzeng-custom | SNP | ti | func_cds | het | 99.7296 | 99.8589 | 99.6007 | 30.7386 | 8492 | 12 | 8481 | 34 | 1 | 2.9412 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 94.1469 | 98.1595 | 90.4494 | 90.9645 | 320 | 6 | 322 | 34 | 1 | 2.9412 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | het | 74.3678 | 68.8533 | 80.8425 | 84.6368 | 8869 | 4012 | 8866 | 2101 | 62 | 2.9510 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | * | 99.4052 | 99.4847 | 99.3259 | 66.9200 | 24904 | 129 | 24900 | 169 | 5 | 2.9586 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | het | 98.1728 | 99.6214 | 96.7658 | 76.7357 | 29207 | 111 | 28304 | 946 | 28 | 2.9598 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e1 | * | 98.6948 | 99.7404 | 97.6710 | 69.5344 | 74543 | 194 | 72256 | 1723 | 51 | 2.9600 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | het | 97.8416 | 99.5651 | 96.1767 | 79.2991 | 19232 | 84 | 18640 | 741 | 22 | 2.9690 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 76.4238 | 95.1325 | 63.8642 | 77.1773 | 18626 | 953 | 18983 | 10741 | 319 | 2.9699 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 76.4238 | 95.1325 | 63.8642 | 77.1773 | 18626 | 953 | 18983 | 10741 | 319 | 2.9699 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | * | 98.2170 | 98.4425 | 97.9924 | 88.3517 | 4930 | 78 | 4930 | 101 | 3 | 2.9703 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 86.9141 | 97.9686 | 78.1013 | 68.8863 | 6607 | 137 | 6598 | 1850 | 55 | 2.9730 | |
| mlin-fermikit | SNP | * | map_l100_m2_e0 | het | 71.6803 | 56.3051 | 98.6068 | 57.9033 | 26125 | 20274 | 26117 | 369 | 11 | 2.9810 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e0 | * | 98.6905 | 99.7377 | 97.6651 | 69.5065 | 73770 | 194 | 71526 | 1710 | 51 | 2.9825 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 17.8082 | 19.6970 | 16.2500 | 98.7063 | 13 | 53 | 13 | 67 | 2 | 2.9851 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 3.8462 | 100.0000 | 1.9608 | 75.9434 | 2 | 0 | 2 | 100 | 3 | 3.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 3.8462 | 100.0000 | 1.9608 | 75.9434 | 2 | 0 | 2 | 100 | 3 | 3.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.6667 | 88.8889 | 5.6738 | 90.0424 | 8 | 1 | 8 | 133 | 4 | 3.0075 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | het | 81.9772 | 77.3999 | 87.1298 | 75.6982 | 36299 | 10599 | 36219 | 5350 | 161 | 3.0094 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 73.8977 | 92.7678 | 61.4068 | 68.2562 | 5785 | 451 | 5919 | 3720 | 112 | 3.0108 | |
| raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | * | 99.3984 | 99.4735 | 99.3234 | 65.0677 | 24372 | 129 | 24368 | 166 | 5 | 3.0121 | |
| bgallagher-sentieon | SNP | tv | * | het | 99.8318 | 99.9594 | 99.7045 | 23.0898 | 591456 | 240 | 591385 | 1753 | 53 | 3.0234 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | het | 73.8384 | 68.2296 | 80.4520 | 83.6682 | 8440 | 3930 | 8437 | 2050 | 62 | 3.0244 | |
| ciseli-custom | SNP | * | map_l100_m2_e0 | het | 81.8850 | 77.2883 | 87.0629 | 75.7023 | 35861 | 10538 | 35782 | 5317 | 161 | 3.0280 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 33.1579 | 52.9412 | 24.1379 | 86.1022 | 27 | 24 | 21 | 66 | 2 | 3.0303 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 97.0881 | 98.3269 | 95.8801 | 89.2469 | 764 | 13 | 768 | 33 | 1 | 3.0303 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 97.1459 | 98.3607 | 95.9608 | 90.0195 | 780 | 13 | 784 | 33 | 1 | 3.0303 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 97.2049 | 98.3951 | 96.0432 | 90.0501 | 797 | 13 | 801 | 33 | 1 | 3.0303 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 64.2322 | 80.3030 | 53.5211 | 95.5261 | 53 | 13 | 38 | 33 | 1 | 3.0303 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.2113 | 98.7743 | 97.6546 | 73.0305 | 1370 | 17 | 1374 | 33 | 1 | 3.0303 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.2010 | 96.5997 | 95.8055 | 76.3827 | 2983 | 105 | 3015 | 132 | 4 | 3.0303 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | * | 80.0731 | 68.3012 | 96.7480 | 89.5225 | 7856 | 3646 | 7854 | 264 | 8 | 3.0303 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | * | 98.0939 | 98.3402 | 97.8488 | 87.6784 | 4503 | 76 | 4503 | 99 | 3 | 3.0303 | |