PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50151-50200 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | tv | map_l125_m1_e0 | het | 96.7521 | 99.7334 | 93.9440 | 75.6347 | 10099 | 27 | 9990 | 644 | 13 | 2.0186 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | het | 97.5401 | 98.0947 | 96.9918 | 89.4930 | 3192 | 62 | 3192 | 99 | 2 | 2.0202 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e0 | het | 97.9986 | 99.6659 | 96.3860 | 71.4860 | 46244 | 155 | 44753 | 1678 | 34 | 2.0262 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.1298 | 99.3978 | 77.5574 | 83.2455 | 9078 | 55 | 8484 | 2455 | 50 | 2.0367 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.1298 | 99.3978 | 77.5574 | 83.2455 | 9078 | 55 | 8484 | 2455 | 50 | 2.0367 | |
| gduggal-snapplat | INDEL | I1_5 | segdup | het | 74.8930 | 76.0223 | 73.7968 | 97.3622 | 409 | 129 | 414 | 147 | 3 | 2.0408 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9971 | 99.4760 | 96.5614 | 59.6546 | 1329 | 7 | 1376 | 49 | 1 | 2.0408 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9927 | 99.4152 | 94.6855 | 62.3980 | 850 | 5 | 873 | 49 | 1 | 2.0408 | |
| qzeng-custom | SNP | * | func_cds | het | 99.6863 | 99.8118 | 99.5610 | 32.9992 | 11140 | 21 | 11112 | 49 | 1 | 2.0408 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.7794 | 95.0997 | 90.5697 | 78.5117 | 2814 | 145 | 2814 | 293 | 6 | 2.0478 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | het | 96.3036 | 99.7142 | 93.1185 | 80.3759 | 7327 | 21 | 7253 | 536 | 11 | 2.0522 | |
| gduggal-snapvard | SNP | * | map_l250_m0_e0 | het | 74.0125 | 93.3599 | 61.3074 | 94.5783 | 1406 | 100 | 1388 | 876 | 18 | 2.0548 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 80.5645 | 99.0173 | 67.9091 | 64.2303 | 2519 | 25 | 2569 | 1214 | 25 | 2.0593 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | het | 96.2702 | 99.7104 | 93.0595 | 80.3258 | 7231 | 21 | 7160 | 534 | 11 | 2.0599 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | het | 97.3715 | 97.9784 | 96.7720 | 88.9838 | 2908 | 60 | 2908 | 97 | 2 | 2.0619 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 42.6981 | 81.4626 | 28.9311 | 78.7122 | 1437 | 327 | 1494 | 3670 | 76 | 2.0708 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | het | 97.9959 | 99.6627 | 96.3839 | 70.0308 | 45206 | 153 | 43739 | 1641 | 34 | 2.0719 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.4138 | 96.3627 | 78.3270 | 66.2442 | 16929 | 639 | 17004 | 4705 | 98 | 2.0829 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 81.5701 | 97.8381 | 69.9407 | 68.1937 | 2127 | 47 | 2122 | 912 | 19 | 2.0833 | |
| ckim-dragen | INDEL | I1_5 | segdup | het | 95.3418 | 99.2565 | 91.7241 | 96.0707 | 534 | 4 | 532 | 48 | 1 | 2.0833 | |
| ckim-dragen | SNP | ti | map_l250_m0_e0 | het | 95.1974 | 95.5032 | 94.8936 | 94.2165 | 892 | 42 | 892 | 48 | 1 | 2.0833 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.0342 | 97.2312 | 98.8506 | 67.1730 | 16505 | 470 | 16513 | 192 | 4 | 2.0833 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.0342 | 97.2312 | 98.8506 | 67.1730 | 16505 | 470 | 16513 | 192 | 4 | 2.0833 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | het | 98.1142 | 97.9247 | 98.3045 | 80.9258 | 2784 | 59 | 2783 | 48 | 1 | 2.0833 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 49.0937 | 86.6667 | 34.2466 | 60.9626 | 13 | 2 | 25 | 48 | 1 | 2.0833 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.3678 | 98.7956 | 95.9807 | 75.1838 | 9023 | 110 | 9170 | 384 | 8 | 2.0833 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.3678 | 98.7956 | 95.9807 | 75.1838 | 9023 | 110 | 9170 | 384 | 8 | 2.0833 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.5234 | 96.3184 | 76.9043 | 63.8905 | 34115 | 1304 | 34337 | 10312 | 215 | 2.0850 | |
| gduggal-snapplat | INDEL | I1_5 | * | het | 74.5979 | 72.6661 | 76.6351 | 71.5717 | 57436 | 21605 | 58022 | 17690 | 370 | 2.0916 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | het | 85.2663 | 97.9135 | 75.5126 | 92.7832 | 1924 | 41 | 1915 | 621 | 13 | 2.0934 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | het | 96.1715 | 99.6977 | 92.8862 | 79.2854 | 6925 | 21 | 6855 | 525 | 11 | 2.0952 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 37.3898 | 74.1259 | 25.0000 | 92.7864 | 106 | 37 | 111 | 333 | 7 | 2.1021 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e0 | het | 85.1643 | 97.8866 | 75.3687 | 92.7134 | 1899 | 41 | 1891 | 618 | 13 | 2.1036 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.4995 | 97.5791 | 95.4436 | 69.9221 | 1975 | 49 | 1990 | 95 | 2 | 2.1053 | |
| ckim-vqsr | SNP | * | map_l125_m2_e1 | * | 70.6297 | 54.9235 | 98.9163 | 88.7326 | 25925 | 21277 | 25922 | 284 | 6 | 2.1127 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 34.5747 | 92.5000 | 21.2608 | 78.3172 | 666 | 54 | 715 | 2648 | 56 | 2.1148 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.5028 | 99.3917 | 79.7641 | 72.5419 | 2941 | 18 | 2976 | 755 | 16 | 2.1192 | |
| ckim-vqsr | SNP | * | map_l125_m2_e0 | * | 70.4819 | 54.7482 | 98.9056 | 88.7400 | 25580 | 21143 | 25577 | 283 | 6 | 2.1201 | |
| jlack-gatk | SNP | tv | * | het | 99.3606 | 99.9332 | 98.7945 | 31.3268 | 591301 | 395 | 591230 | 7214 | 153 | 2.1209 | |
| raldana-dualsentieon | SNP | ti | * | het | 99.9019 | 99.8809 | 99.9229 | 17.7757 | 1280364 | 1527 | 1280313 | 988 | 21 | 2.1255 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.6798 | 94.7674 | 62.9921 | 72.8632 | 163 | 9 | 160 | 94 | 2 | 2.1277 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 20.3390 | 100.0000 | 11.3208 | 89.1393 | 8 | 0 | 6 | 47 | 1 | 2.1277 | |
| asubramanian-gatk | SNP | * | func_cds | * | 99.6470 | 99.5537 | 99.7405 | 30.0602 | 18069 | 81 | 18066 | 47 | 1 | 2.1277 | |
| asubramanian-gatk | SNP | * | func_cds | het | 99.5968 | 99.6147 | 99.5789 | 34.4684 | 11118 | 43 | 11115 | 47 | 1 | 2.1277 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 18.3861 | 14.4397 | 25.3012 | 64.2755 | 67 | 397 | 63 | 186 | 4 | 2.1505 | |
| gduggal-bwafb | SNP | ti | segdup | het | 98.5285 | 99.3516 | 97.7189 | 92.3400 | 11952 | 78 | 11952 | 279 | 6 | 2.1505 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 91.9958 | 97.3948 | 87.1640 | 83.7213 | 27964 | 748 | 28079 | 4135 | 89 | 2.1524 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 91.9958 | 97.3948 | 87.1640 | 83.7213 | 27964 | 748 | 28079 | 4135 | 89 | 2.1524 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 29.5626 | 82.2368 | 18.0203 | 88.7412 | 125 | 27 | 142 | 646 | 14 | 2.1672 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 65.9259 | 0 | 0 | 0 | 46 | 1 | 2.1739 | ||