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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 993 994 995 996 997 998 999 1000 1001 ... 1720 1721 » 49801-49850 / 86044 show all
ckim-isaac	SNP	tv	map_l250_m2_e1	*	60.3106	43.2785	99.4484	91.3314	1262	1654	1262	7	1	14.2857
gduggal-bwafb	INDEL	I16_PLUS	HG002compoundhet	*	58.0785	43.2571	88.3503	33.1438	927	1216	1039	137	136	99.2701
gduggal-snapvard	INDEL	D6_15	map_l125_m2_e1	homalt	58.6900	43.2432	91.3043	78.8991	16	21	21	2	2	100.0000
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	51.1017	43.2290	62.4805	48.0708	1063	1396	4398	2641	1993	75.4638
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	51.7017	43.2260	64.3120	56.8434	1758	2309	1748	970	697	71.8557
mlin-fermikit	SNP	*	map_l250_m2_e0	homalt	52.9680	43.1869	68.4770	75.7965	1160	1526	1160	534	494	92.5094
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	53.5743	43.1856	70.5446	64.5614	263	346	285	119	105	88.2353
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	59.4214	43.1818	95.2381	93.9481	19	25	20	1	1	100.0000
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	51.8908	43.1818	65.0000	89.0710	19	25	13	7	3	42.8571
qzeng-custom	INDEL	I1_5	map_l250_m1_e0	homalt	59.6512	43.1818	96.4286	96.5895	19	25	27	1	0	0.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	58.6858	43.1579	91.6667	90.6222	287	378	286	26	22	84.6154
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	52.4859	43.1507	66.9753	66.7692	378	498	434	214	200	93.4579
ciseli-custom	INDEL	D16_PLUS	map_l100_m2_e1	het	55.8807	43.1373	79.3103	88.0165	22	29	23	6	3	50.0000
egarrison-hhga	INDEL	D16_PLUS	HG002compoundhet	hetalt	60.1689	43.1017	99.6134	31.8701	831	1097	773	3	3	100.0000
ckim-isaac	SNP	tv	map_l250_m2_e0	*	60.1307	43.0951	99.4396	91.3095	1242	1640	1242	7	1	14.2857
asubramanian-gatk	SNP	*	map_l100_m1_e0	*	60.2018	43.0908	99.8527	84.6729	31199	41204	31193	46	12	26.0870
anovak-vg	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	50.4202	43.0804	60.7748	52.4011	772	1020	753	486	332	68.3128
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	46.2416	43.0804	49.9034	66.9082	772	1020	775	778	771	99.1003
gduggal-snapvard	INDEL	D6_15	map_l100_m2_e0	homalt	58.4551	43.0769	90.9091	76.7606	28	37	30	3	3	100.0000
gduggal-snapvard	INDEL	D6_15	map_siren	homalt	57.7796	43.0769	87.7193	72.0588	56	74	50	7	7	100.0000
anovak-vg	INDEL	I1_5	map_l150_m2_e0	het	51.4023	43.0421	63.7931	93.5841	133	176	148	84	8	9.5238
egarrison-hhga	INDEL	D16_PLUS	*	hetalt	60.0179	43.0419	99.1060	48.8235	832	1101	776	7	6	85.7143
gduggal-snapplat	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	52.7157	43.0290	68.0310	66.2410	1574	2084	2194	1031	178	17.2648
jpowers-varprowl	INDEL	I16_PLUS	map_siren	*	50.3401	43.0233	60.6557	78.9655	37	49	37	24	24	100.0000
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	42.8855	43.0211	42.7507	47.9409	937	1241	1778	2381	1894	79.5464
ckim-isaac	SNP	tv	map_l150_m2_e1	homalt	60.1387	43.0092	99.9438	72.5081	1778	2356	1778	1	1	100.0000
ckim-gatk	SNP	tv	map_l250_m1_e0	homalt	60.1307	42.9907	100.0000	93.6519	368	488	368	0	0
gduggal-snapplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	38.8523	42.9872	35.4430	84.3564	236	313	252	459	4	0.8715
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	60.0653	42.9847	99.6711	45.3237	337	447	303	1	1	100.0000
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	59.9599	42.9829	99.1026	48.8525	830	1101	773	7	6	85.7143
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	59.9599	42.9829	99.1026	48.8525	830	1101	773	7	6	85.7143
ckim-isaac	INDEL	D6_15	map_l125_m2_e1	*	59.4595	42.9688	96.4912	90.9236	55	73	55	2	2	100.0000
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	50.1596	42.9630	60.2524	58.3990	58	77	191	126	19	15.0794
ckim-isaac	SNP	tv	map_l250_m1_e0	*	60.0000	42.9543	99.4751	90.6960	1137	1510	1137	6	1	16.6667
anovak-vg	INDEL	I1_5	HG002compoundhet	het	51.6510	42.9412	64.7929	62.2549	365	485	4553	2474	1995	80.6386
gduggal-bwaplat	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	59.0036	42.9403	94.2675	81.9124	295	392	296	18	12	66.6667
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	49.8333	42.9384	59.3660	55.4700	830	1103	824	564	402	71.2766
mlin-fermikit	INDEL	D1_5	map_l250_m2_e0	*	56.5892	42.9348	82.9787	91.5996	79	105	78	16	14	87.5000
gduggal-snapplat	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	47.5340	42.9094	53.2758	84.2729	6684	8893	6855	6012	485	8.0672
mlin-fermikit	INDEL	I1_5	map_l125_m0_e0	*	57.0815	42.9032	85.2564	80.1020	133	177	133	23	21	91.3043
mlin-fermikit	SNP	tv	map_l250_m2_e0	homalt	50.5025	42.9029	61.3740	74.4739	402	535	402	253	237	93.6759
mlin-fermikit	INDEL	I1_5	map_l150_m2_e1	het	59.5186	42.9022	97.1429	85.6704	136	181	136	4	2	50.0000
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	59.2422	42.8650	95.8708	51.4971	2331	3107	2345	101	90	89.1089
ckim-isaac	SNP	tv	map_l150_m2_e0	homalt	59.9931	42.8606	99.9429	72.5764	1750	2333	1750	1	1	100.0000
gduggal-bwaplat	SNP	*	map_l150_m2_e1	homalt	59.9917	42.8596	99.9408	85.5254	5069	6758	5065	3	3	100.0000
gduggal-bwaplat	SNP	*	lowcmp_SimpleRepeat_triTR_51to200	het	60.0000	42.8571	100.0000	99.3088	3	4	3	0	0
gduggal-bwaplat	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	60.0000	42.8571	100.0000	99.9796	9	12	10	0	0
gduggal-bwaplat	INDEL	C1_5	HG002complexvar	*		42.8571		100.0000	3	4	0	0	0
gduggal-bwaplat	INDEL	C1_5	HG002complexvar	het		42.8571		100.0000	3	4	0	0	0
gduggal-bwaplat	INDEL	D16_PLUS	map_l100_m0_e0	*	60.0000	42.8571	100.0000	97.6967	12	16	12	0	0

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