PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49651-49700 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 59.2593 | 44.4444 | 88.8889 | 96.0352 | 8 | 10 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | * | map_l125_m0_e0 | hetalt | 53.3333 | 44.4444 | 66.6667 | 85.3659 | 4 | 5 | 4 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | C1_5 | * | het | 47.4725 | 44.4444 | 50.9434 | 97.6237 | 4 | 5 | 81 | 78 | 5 | 6.4103 | |
| ciseli-custom | SNP | tv | map_l125_m0_e0 | hetalt | 53.3333 | 44.4444 | 66.6667 | 85.3659 | 4 | 5 | 4 | 2 | 1 | 50.0000 | |
| ckim-isaac | SNP | tv | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 85.7143 | 4 | 5 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 59.5041 | 44.4444 | 90.0000 | 83.0508 | 4 | 5 | 9 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | hetalt | 61.5385 | 44.4444 | 100.0000 | 95.7746 | 4 | 5 | 6 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 56.1404 | 44.4444 | 76.1905 | 92.0152 | 4 | 5 | 16 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e1 | het | 60.2597 | 44.4444 | 93.5484 | 90.0000 | 60 | 75 | 58 | 4 | 3 | 75.0000 | |
| ckim-isaac | SNP | * | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 85.7143 | 4 | 5 | 4 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 47.6190 | 44.4444 | 51.2821 | 43.8849 | 12 | 15 | 40 | 38 | 35 | 92.1053 | |
| anovak-vg | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | het | 51.9481 | 44.4444 | 62.5000 | 88.7324 | 4 | 5 | 10 | 6 | 1 | 16.6667 | |
| anovak-vg | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | * | 53.3333 | 44.4444 | 66.6667 | 94.6429 | 12 | 15 | 12 | 6 | 6 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 44.4444 | 66.6667 | 98.8235 | 4 | 5 | 4 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | segdup | hetalt | 61.5385 | 44.4444 | 100.0000 | 92.9412 | 4 | 5 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 44.4444 | 66.6667 | 99.0050 | 4 | 5 | 4 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 57.1429 | 44.4444 | 80.0000 | 82.7586 | 4 | 5 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 60.9137 | 44.4444 | 96.7742 | 96.6559 | 20 | 25 | 30 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | * | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 96.6942 | 4 | 5 | 4 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 96.6942 | 4 | 5 | 4 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m0_e0 | het | 61.5385 | 44.4444 | 100.0000 | 95.7895 | 4 | 5 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | homalt | 57.1429 | 44.4444 | 80.0000 | 95.0495 | 4 | 5 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m0_e0 | het | 57.1429 | 44.4444 | 80.0000 | 96.3768 | 4 | 5 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e1 | het | 61.4944 | 44.4347 | 99.8167 | 88.7261 | 7082 | 8856 | 7080 | 13 | 2 | 15.3846 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | het | 60.7617 | 44.3925 | 96.2540 | 19.2156 | 380 | 476 | 5730 | 223 | 211 | 94.6188 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 58.9266 | 44.3902 | 87.6190 | 88.5120 | 91 | 114 | 92 | 13 | 12 | 92.3077 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 58.9266 | 44.3902 | 87.6190 | 88.5120 | 91 | 114 | 92 | 13 | 12 | 92.3077 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e1 | * | 60.9929 | 44.3299 | 97.7273 | 95.8015 | 43 | 54 | 43 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.8570 | 44.3272 | 37.8906 | 67.8795 | 168 | 211 | 291 | 477 | 388 | 81.3417 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 56.4570 | 44.2786 | 77.8761 | 77.2177 | 89 | 112 | 88 | 25 | 20 | 80.0000 | |
| asubramanian-gatk | SNP | tv | map_l100_m2_e0 | het | 61.3148 | 44.2480 | 99.8141 | 88.7563 | 6981 | 8796 | 6979 | 13 | 2 | 15.3846 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | hetalt | 60.7686 | 44.2308 | 97.0588 | 96.6403 | 23 | 29 | 33 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l125_m1_e0 | het | 61.0167 | 44.2242 | 98.3680 | 59.8543 | 8078 | 10188 | 8077 | 134 | 7 | 5.2239 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002complexvar | het | 60.5561 | 44.2105 | 96.0784 | 72.5561 | 294 | 371 | 294 | 12 | 5 | 41.6667 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.1378 | 44.2087 | 94.0120 | 60.5667 | 500 | 631 | 942 | 60 | 57 | 95.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 57.8898 | 44.1696 | 83.9744 | 90.0574 | 125 | 158 | 131 | 25 | 7 | 28.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | * | 61.1860 | 44.1634 | 99.5614 | 97.6747 | 227 | 287 | 227 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | * | 61.2013 | 44.1254 | 99.8365 | 85.2564 | 32978 | 41759 | 32972 | 54 | 14 | 25.9259 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | homalt | 59.9144 | 44.1176 | 93.3333 | 91.0180 | 15 | 19 | 14 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 60.5850 | 44.1176 | 96.6667 | 68.7500 | 30 | 38 | 29 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 60.5850 | 44.1176 | 96.6667 | 71.6981 | 30 | 38 | 29 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | homalt | 59.4059 | 44.1176 | 90.9091 | 79.0476 | 15 | 19 | 20 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 60.0000 | 44.1176 | 93.7500 | 72.6496 | 30 | 38 | 30 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 60.4255 | 44.0994 | 95.9459 | 40.8000 | 71 | 90 | 71 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 58.6032 | 44.0945 | 87.3418 | 56.5934 | 56 | 71 | 69 | 10 | 8 | 80.0000 | |