PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48301-48350 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | HG002compoundhet | hetalt | 66.4170 | 50.0717 | 98.6059 | 45.0179 | 1048 | 1045 | 1061 | 15 | 14 | 93.3333 | |
| eyeh-varpipe | INDEL | D1_5 | HG002compoundhet | * | 54.4680 | 50.0613 | 59.7255 | 65.1711 | 6125 | 6110 | 6092 | 4108 | 4053 | 98.6611 | |
| egarrison-hhga | INDEL | D6_15 | HG002complexvar | hetalt | 65.3629 | 50.0494 | 94.1788 | 58.1739 | 507 | 506 | 453 | 28 | 24 | 85.7143 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 57.1429 | 50.0000 | 66.6667 | 85.0000 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 65.2174 | 50.0000 | 93.7500 | 72.8814 | 15 | 15 | 15 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 92.3077 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.4444 | 3 | 3 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.8333 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.5517 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.7742 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 86.6667 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 90.0000 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 98.1132 | 2 | 2 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.0588 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.9184 | 2 | 2 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.8333 | 1 | 1 | 1 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3333 | 2 | 2 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.9184 | 2 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | decoy | * | 64.0777 | 50.0000 | 89.1892 | 99.8767 | 5 | 5 | 33 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | * | decoy | het | 63.4921 | 50.0000 | 86.9565 | 99.7259 | 3 | 3 | 20 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 52.6316 | 50.0000 | 55.5556 | 97.1787 | 2 | 2 | 20 | 16 | 13 | 81.2500 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 99.0291 | 1 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 59.5745 | 50.0000 | 73.6842 | 74.3243 | 25 | 25 | 28 | 10 | 7 | 70.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.0198 | 3 | 3 | 6 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.7591 | 3 | 3 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.8022 | 3 | 3 | 8 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 77.7778 | 2 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 55.1724 | 50.0000 | 61.5385 | 90.5109 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 89.8551 | 8 | 8 | 8 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | tech_badpromoters | * | 57.1429 | 50.0000 | 66.6667 | 40.0000 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | tech_badpromoters | het | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 2 | 2 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | func_cds | hetalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 1 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 47.6190 | 50.0000 | 45.4545 | 94.3878 | 2 | 2 | 5 | 6 | 6 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.5926 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 94.7368 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D6_15 | func_cds | hetalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 1 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.3871 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | * | 65.8098 | 50.0000 | 96.2406 | 83.4577 | 129 | 129 | 128 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | * | 65.8291 | 50.0000 | 96.3235 | 84.3858 | 132 | 132 | 131 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.7742 | 1 | 1 | 1 | 0 | 0 | ||