PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48201-48250 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | * | map_l250_m1_e0 | * | 57.5139 | 51.1475 | 65.6904 | 97.4137 | 156 | 149 | 157 | 82 | 40 | 48.7805 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 64.8666 | 51.1386 | 88.6695 | 86.4061 | 2066 | 1974 | 2066 | 264 | 62 | 23.4848 | |
| gduggal-bwafb | INDEL | I16_PLUS | * | * | 66.2146 | 51.1369 | 93.9014 | 38.2990 | 3261 | 3116 | 3372 | 219 | 218 | 99.5434 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 54.0093 | 51.1111 | 57.2559 | 47.5069 | 69 | 66 | 217 | 162 | 144 | 88.8889 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | homalt | 67.5325 | 51.0806 | 99.6169 | 90.9281 | 260 | 249 | 260 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | * | 64.1368 | 51.0638 | 86.2069 | 84.3243 | 24 | 23 | 25 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 66.8725 | 51.0638 | 96.8586 | 35.5002 | 288 | 276 | 1480 | 48 | 47 | 97.9167 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 49.8073 | 51.0638 | 48.6111 | 53.5484 | 24 | 23 | 35 | 37 | 30 | 81.0811 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 67.2691 | 51.0539 | 98.5788 | 38.7173 | 872 | 836 | 763 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 59.1529 | 51.0315 | 70.3486 | 60.3619 | 940 | 902 | 1433 | 604 | 512 | 84.7682 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 56.5463 | 51.0204 | 63.4146 | 78.6458 | 25 | 24 | 26 | 15 | 14 | 93.3333 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.9231 | 51.0140 | 75.6098 | 42.2535 | 327 | 314 | 124 | 40 | 40 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 62.0536 | 50.9807 | 79.2711 | 51.4534 | 3223 | 3099 | 2436 | 637 | 614 | 96.3893 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 62.0536 | 50.9807 | 79.2711 | 51.4534 | 3223 | 3099 | 2436 | 637 | 614 | 96.3893 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.1562 | 50.9721 | 98.3986 | 41.3667 | 1206 | 1160 | 1106 | 18 | 15 | 83.3333 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 50.9584 | 0.0000 | 0.0000 | 3004 | 2891 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 50.9584 | 0.0000 | 0.0000 | 3004 | 2891 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 65.0432 | 50.9569 | 89.8925 | 58.2960 | 426 | 410 | 418 | 47 | 47 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.3433 | 50.9434 | 99.3151 | 42.0635 | 270 | 260 | 290 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m1_e0 | * | 62.0690 | 50.9434 | 79.4118 | 90.3683 | 27 | 26 | 27 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | * | 62.0690 | 50.9434 | 79.4118 | 91.7073 | 27 | 26 | 27 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e1 | * | 62.0690 | 50.9434 | 79.4118 | 91.9048 | 27 | 26 | 27 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m1_e0 | het | 66.1838 | 50.9363 | 94.4598 | 80.5181 | 680 | 655 | 682 | 40 | 17 | 42.5000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | * | 53.5373 | 50.9091 | 56.4516 | 88.7681 | 140 | 135 | 140 | 108 | 64 | 59.2593 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 67.2157 | 50.9066 | 98.9011 | 51.7881 | 365 | 352 | 360 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | * | map_l150_m1_e0 | homalt | 59.9718 | 50.8826 | 73.0143 | 56.6613 | 5736 | 5537 | 5736 | 2120 | 1986 | 93.6792 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 63.3990 | 50.8728 | 84.1085 | 55.4404 | 204 | 197 | 217 | 41 | 32 | 78.0488 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 66.8472 | 50.8696 | 97.4576 | 61.1842 | 117 | 113 | 115 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.4059 | 50.8475 | 71.4286 | 81.4978 | 30 | 29 | 30 | 12 | 12 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 49.1803 | 50.8475 | 47.6190 | 48.7805 | 30 | 29 | 30 | 33 | 26 | 78.7879 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 58.2524 | 50.8475 | 68.1818 | 80.3571 | 30 | 29 | 30 | 14 | 14 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 66.9692 | 50.8453 | 98.0681 | 41.1478 | 1203 | 1163 | 1066 | 21 | 14 | 66.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.1082 | 50.8361 | 98.7013 | 60.3433 | 456 | 441 | 456 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | * | homalt | 49.8532 | 50.8274 | 48.9155 | 43.2091 | 860 | 832 | 857 | 895 | 865 | 96.6480 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 55.4366 | 50.8272 | 60.9654 | 44.0200 | 1874 | 1813 | 2046 | 1310 | 988 | 75.4198 | |
| ckim-isaac | SNP | * | map_l125_m2_e1 | homalt | 67.3574 | 50.7985 | 99.9327 | 65.6358 | 8906 | 8626 | 8906 | 6 | 6 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 56.1720 | 50.7947 | 62.8225 | 45.1920 | 7510 | 7275 | 7523 | 4452 | 4009 | 90.0494 | |
| ckim-isaac | SNP | * | map_l125_m2_e0 | homalt | 67.3485 | 50.7856 | 99.9434 | 65.6165 | 8824 | 8551 | 8824 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 56.7870 | 50.7723 | 64.4183 | 57.0048 | 1808 | 1753 | 1805 | 997 | 979 | 98.1946 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 64.6659 | 50.7487 | 89.1009 | 66.3976 | 9219 | 8947 | 9197 | 1125 | 989 | 87.9111 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 64.6659 | 50.7487 | 89.1009 | 66.3976 | 9219 | 8947 | 9197 | 1125 | 989 | 87.9111 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | homalt | 60.1770 | 50.7463 | 73.9130 | 82.8358 | 34 | 33 | 34 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002complexvar | * | 65.8380 | 50.7257 | 93.7759 | 46.3252 | 664 | 645 | 678 | 45 | 44 | 97.7778 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | homalt | 67.2881 | 50.7157 | 99.9483 | 79.7369 | 5811 | 5647 | 5804 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 67.2854 | 50.6993 | 100.0000 | 38.7234 | 145 | 141 | 144 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m0_e0 | homalt | 67.2646 | 50.6757 | 100.0000 | 92.9044 | 75 | 73 | 75 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 64.5118 | 50.6716 | 88.7536 | 66.8832 | 9205 | 8961 | 9186 | 1164 | 976 | 83.8488 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 64.5118 | 50.6716 | 88.7536 | 66.8832 | 9205 | 8961 | 9186 | 1164 | 976 | 83.8488 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 56.0188 | 50.6667 | 62.6353 | 47.3349 | 532 | 518 | 984 | 587 | 499 | 85.0085 | |
| ckim-isaac | SNP | * | map_l250_m2_e1 | het | 67.0943 | 50.6649 | 99.2926 | 92.2258 | 2667 | 2597 | 2667 | 19 | 2 | 10.5263 | |